# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_2	LOCUS_00020	sequence001:655..1005(+)	internal_stop_codon	1003..1005(+),643..645(+)		Q2RFP7	50S ribosomal protein L3	87.1	47.8	42.2
MGA_3	LOCUS_00030	sequence001:1337..1702(+)	internal_stop_codon	1148..1150(+),1334..1336(+)		Q8DMN0	50S ribosomal protein L4	96.7	56.2	36.1
MGA_5	LOCUS_00050	sequence001:2043..2213(+)	internal_stop_codon	2211..2213(+)		Q9CDW5	50S ribosomal protein L2	100.0	20.3	64.3
MGA_6	LOCUS_00060	sequence001:2373..2888(+)	internal_stop_codon	2211..2213(+)		Q8DMM8	50S ribosomal protein L2	97.1	57.6	53.6
MGA_7	LOCUS_00070	sequence001:2982..3122(+)	internal_stop_codon	2940..2942(+),3120..3122(+)		A0A0H3CYY4	30S ribosomal protein S19	100.0	49.5	65.2
MGA_8	LOCUS_00080	sequence001:3268..3594(+)	partial			P38511	50S ribosomal protein L22	92.6	62.9	50.0
MGA_14	LOCUS_00140	sequence001:6580..6804(+)	partial			Q72CG7	30S ribosomal protein S14 type Z	67.6	82.0	66.0
MGA_17	LOCUS_00170	sequence001:7907..8185(+)	internal_stop_codon	8183..8185(+)		Q64NM4	50S ribosomal protein L18	98.9	79.8	54.9
MGA_18	LOCUS_00180	sequence001:8407..8745(+)	partial			A9WH83	30S ribosomal protein S5	97.3	61.2	50.5
MGA_19	LOCUS_00190	sequence001:8878..9210(+)	internal_stop_codon	9208..9210(+)		Q8RIH5	50S ribosomal protein L15	99.1	67.3	52.3
MGA_21	LOCUS_00210	sequence001:9526..9990(+)	internal_stop_codon	9988..9990(+),9499..9501(+),9493..9495(+)		P57571	protein translocase subunit SecY	100.0	36.4	44.7
MGA_22	LOCUS_00220	sequence001:10072..10404(+)	internal_stop_codon	9988..9990(+),10402..10404(+)		WP_005810127.1	preprotein translocase subunit SecY	100.0	24.9	39.1
MGA_27	LOCUS_00260	sequence002:522..1064(-)	partial			E8TLI4	DNA-directed RNA polymerase subunit beta'	76.7	9.9	52.2
MGA_29	LOCUS_00280	sequence002:1521..3218(-)	internal_stop_codon	3324..3326(-)		B5YFV7	DNA-directed RNA polymerase subunit beta'	100.0	42.6	51.4
MGA_30	LOCUS_00290	sequence002:3324..4349(-)	internal_stop_codon	3324..3326(-)		Q8G515	DNA-directed RNA polymerase subunit beta'	98.2	26.1	49.6
MGA_31	LOCUS_00300	sequence002:4615..5418(-)	internal_stop_codon	5623..5625(-)		A0A0H3N1M1	DNA-directed RNA polymerase subunit beta	87.3	19.6	68.7
MGA_32	LOCUS_00310	sequence002:5722..6639(-)	internal_stop_codon	6796..6798(-),5623..5625(-),5722..5724(-)		A9WH12	DNA-directed RNA polymerase subunit beta	90.2	22.3	48.0
MGA_33	LOCUS_00320	sequence002:6796..8049(-)	internal_stop_codon	6796..6798(-)		Q2RFN9	DNA-directed RNA polymerase subunit beta	95.2	34.9	44.0
MGA_39	LOCUS_00380	sequence003:5241..5615(+)	partial			B5YLD2	threonine--tRNA ligase	80.6	16.0	48.0
MGA_40	LOCUS_00390	sequence003:5631..5993(+)	internal_stop_codon	5991..5993(+)		Q7NCU0	threonine--tRNA ligase	90.8	18.0	52.2
MGA_41	LOCUS_00400	sequence003:5994..6542(+)	internal_stop_codon	6762..6764(+),5991..5993(+),6540..6542(+)		WP_000435143.1	threonine--tRNA ligase	92.3	26.0	45.0
MGA_42	LOCUS_00410	sequence003:6606..6764(+)	internal_stop_codon	6762..6764(+),6540..6542(+)		Q8DGW0	threonine--tRNA ligase	100.0	8.6	63.5
MGA_43	LOCUS_00420	sequence003:6765..7115(+)	internal_stop_codon	6762..6764(+),6540..6542(+)		Q189B8	threonine--tRNA ligase	98.3	17.8	43.0
MGA_44	LOCUS_00430	sequence003:8492..8692(+)	internal_stop_codon	8690..8692(+),8474..8476(+),8705..8707(+),8489..8491(+),8402..8404(+)		WP_011405586.1	T9SS C-terminal target domain-containing protein	95.5	5.9	45.3
MGA_47	LOCUS_00450	sequence004:546..962(-)	internal_stop_codon	546..548(-)		D1B6U2	transcription termination/antitermination protein NusG	95.7	74.0	42.2
MGA_53	LOCUS_00510	sequence004:4794..5111(-)	internal_stop_codon	5148..5150(-),4758..4760(-),4794..4796(-),5310..5312(-)		WP_011986449.1	general secretion pathway protein GspE	99.0	18.9	52.9
MGA_64	LOCUS_00600	sequence005:5033..5350(-)	internal_stop_codon	5375..5377(-)		WP_010942139.1	type II secretion system protein F	89.5	22.2	29.8
MGA_65	LOCUS_00610	sequence005:5375..5794(-)	internal_stop_codon	5375..5377(-),5843..5845(-)		WP_011266635.1	type II secretion system protein F	97.1	33.6	31.6
MGA_70	LOCUS_00650	sequence006:3213..3548(-)	internal_stop_codon	3582..3584(-),3603..3605(-),3213..3215(-),3750..3752(-),3648..3650(-)		WP_011404069.1	ATP-dependent Clp protease ClpC	92.8	11.3	38.8
MGA_71	LOCUS_00660	sequence006:3918..4301(-)	internal_stop_codon	4572..4574(-),3750..3752(-),3648..3650(-),3864..3866(-),3879..3881(-),3918..3920(-)		WP_000002813.1	ATP-dependent Clp protease ATP-binding subunit	93.7	16.1	31.1
MGA_72	LOCUS_00670	sequence006:4635..4814(-)	internal_stop_codon	4572..4574(-),4635..4637(-),4854..4856(-),4596..4598(-),4890..4892(-),4962..4964(-)		F0KI86	chaperone protein ClpB	100.0	6.9	64.4
MGA_89	LOCUS_00810	sequence008:5955..6431(+)	internal_stop_codon	5742..5744(+),5913..5915(+),5781..5783(+)		WP_002218487.1	twitching motility protein PilT	94.3	42.9	48.3
MGA_92	LOCUS_00820	sequence009:951..1250(+)	frameshift,internal_stop_codon	1254..1256(+),1248..1250(+),855..857(+),1299..1301(+)	1322	D3HAC3	UvrABC system protein C	100.0	14.8	39.4
MGA_95	LOCUS_00850	sequence009:2231..2503(+)	internal_stop_codon	2123..2125(+),2501..2503(+),2537..2539(+)		B1MC92	UvrABC system protein C	75.6	10.1	45.6
MGA_107	LOCUS_00960	sequence010:3686..3925(-)	internal_stop_codon	3533..3535(-),3542..3544(-),4196..4198(-),3614..3616(-),3962..3964(-),3551..3553(-),3686..3688(-)		WP_012546013.1	type IV-A pilus assembly ATPase PilB	91.1	12.7	68.1
MGA_108	LOCUS_00970	sequence010:4196..4426(-)	internal_stop_codon	3962..3964(-),4517..4519(-),4196..4198(-),4505..4507(-)		WP_002899360.1	type II secretion system protein E	81.6	11.1	56.5
MGA_112	LOCUS_01010	sequence011:541..1257(-)	internal_stop_codon	1450..1452(-)		A5I797	pyruvate kinase	92.4	37.1	42.5
MGA_113	LOCUS_01020	sequence011:1450..1740(-)	internal_stop_codon	1939..1941(-),1450..1452(-)		Q8EX62	pyruvate kinase	92.7	18.3	38.2
MGA_119	LOCUS_01080	sequence012:1056..1229(+)	internal_stop_codon	1410..1412(+),1449..1451(+),1227..1229(+),792..794(+),1029..1031(+),1302..1304(+),921..923(+),1293..1295(+)		A9WEH7	arginine--tRNA ligase	96.5	9.6	47.3
MGA_120	LOCUS_01090	sequence012:1680..1898(+)	internal_stop_codon	1665..1667(+),1620..1622(+)		Q5NHI8	arginine--tRNA ligase	95.8	11.9	40.6
MGA_125	LOCUS_01140	sequence012:3985..4386(+)	internal_stop_codon	3961..3963(+),3739..3741(+),4648..4650(+),3901..3903(+),3928..3930(+),4420..4422(+),3757..3759(+),4384..4386(+)		WP_012583335.1	(p)ppGpp synthetase	100.0	18.2	45.1
MGA_136	LOCUS_01250	sequence013:4704..4913(+)	internal_stop_codon	4614..4616(+),4911..4913(+),4677..4679(+),5079..5081(+)		WP_011073811.1	MSHA biogenesis protein MshE	97.1	11.4	64.2
MGA_137	LOCUS_01260	sequence013:4923..5081(+)	internal_stop_codon	4911..4913(+),4677..4679(+),5079..5081(+),5223..5225(+),5265..5267(+),5295..5297(+)		WP_010947251.1	type IV-A pilus assembly ATPase PilB	98.1	8.9	74.5
MGA_138	LOCUS_01270	sequence014:149..781(-)	internal_stop_codon	848..850(-),1025..1027(-)		A9WGS5	ATP synthase gamma chain	93.3	60.7	33.5
MGA_144	LOCUS_01330	sequence014:3519..3869(-)	internal_stop_codon	3939..3941(-)		O66564	ATP synthase subunit c	60.3	70.0	50.0
MGA_149	LOCUS_01380	sequence015:2452..2667(+)	internal_stop_codon	2209..2211(+),2272..2274(+),2404..2406(+),2665..2667(+),2449..2451(+)		WP_002118101.1	ABC transporter	100.0	22.8	73.2
MGA_150	LOCUS_01390	sequence015:2710..2946(+)	internal_stop_codon	2449..2451(+),2665..2667(+)		WP_011073574.1	ABC transporter	96.2	23.4	41.3
MGA_151	LOCUS_01400	sequence015:3323..3490(+)	internal_stop_codon	3314..3316(+),3488..3490(+),3071..3073(+),3281..3283(+),3590..3592(+),3293..3295(+),3095..3097(+)		Q32K82	transport permease protein	98.2	21.1	53.7
MGA_155	LOCUS_01440	sequence015:5279..5476(-)	internal_stop_codon	5597..5599(-),5648..5650(-),5714..5716(-),5480..5482(-)		WP_002853697.1	cation transporter	80.0	17.6	38.5
MGA_163	LOCUS_01500	sequence016:4322..4633(-)	internal_stop_codon	4307..4309(-),4322..4324(-),4211..4213(-),4823..4825(-),4754..4756(-),4646..4648(-),4166..4168(-),4634..4636(-),4805..4807(-),4223..4225(-)		Q9CHA1	tRNA-specific 2-thiouridylase MnmA	98.1	26.9	64.4
MGA_167	LOCUS_01540	sequence017:1804..2247(+)	internal_stop_codon	1633..1635(+),1549..1551(+),1570..1572(+),1621..1623(+),1534..1536(+),2245..2247(+)		Q185A2	ribonuclease R	98.6	18.4	48.3
MGA_168	LOCUS_01550	sequence017:2359..2877(+)	internal_stop_codon	2875..2877(+),2245..2247(+)		Q185A2	ribonuclease R	100.0	24.6	42.3
MGA_176	LOCUS_01630	sequence018:1426..1665(+)	internal_stop_codon	1663..1665(+),1777..1779(+)		Q64R17	UvrABC system protein A	98.7	8.3	65.4
MGA_180	LOCUS_01670	sequence018:5135..5560(+)	internal_stop_codon	5588..5590(+),5762..5764(+),5672..5674(+),5558..5560(+),5603..5605(+),5777..5779(+)		Q6HCX7	pseudouridine synthase	97.2	59.8	44.9
MGA_183	LOCUS_01690	sequence019:2636..2911(-)	internal_stop_codon	3176..3178(-),2930..2932(-),3137..3139(-)		Q5FIN5	serine--tRNA ligase	98.9	20.7	55.6
MGA_184	LOCUS_01700	sequence019:2930..3136(-)	internal_stop_codon	3212..3214(-),3176..3178(-),2930..2932(-),3137..3139(-)		WP_010879527.1	serine--tRNA ligase	100.0	15.0	57.4
MGA_185	LOCUS_01710	sequence019:3665..3895(-)	internal_stop_codon	3665..3667(-),3440..3442(-)		B8E0R9	serine--tRNA ligase	97.4	18.1	44.2
MGA_190	LOCUS_01760	sequence020:2721..2864(-)	internal_stop_codon	3108..3110(-),3099..3101(-),3138..3140(-),2721..2723(-),3096..3098(-),2949..2951(-),2577..2579(-)		WP_000290155.1	peptide-methionine (R)-S-oxide reductase	95.7	14.0	51.1
MGA_192	LOCUS_01780	sequence020:4808..5269(-)	partial			WP_011202907.1	hypothetical protein	37.3	36.2	50.9
MGA_198	LOCUS_01840	sequence021:2159..2548(+)	internal_stop_codon	2771..2773(+),1961..1963(+),2144..2146(+),2633..2635(+),2546..2548(+)		Q8Y4I4	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	99.2	26.3	43.3
MGA_199	LOCUS_01850	sequence021:2777..2905(+)	internal_stop_codon	2771..2773(+),2921..2923(+),2903..2905(+),2633..2635(+),2987..2989(+)		Q8ZJN0	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	100.0	8.2	59.5
MGA_202	LOCUS_01880	sequence021:4869..5279(-)	internal_stop_codon	5328..5330(-),5397..5399(-)		WP_052846363.1	thioredoxin-disulfide reductase	93.4	40.9	40.9
MGA_205	LOCUS_01900	sequence022:189..674(+)	internal_stop_codon	834..836(+),672..674(+),858..860(+)		WP_011389031.1	anaerobic ribonucleoside triphosphate reductase	96.3	23.0	48.4
MGA_206	LOCUS_01910	sequence022:678..836(+)	internal_stop_codon	834..836(+),672..674(+),858..860(+)		WP_003111559.1	anaerobic ribonucleoside triphosphate reductase	100.0	7.7	59.6
MGA_207	LOCUS_01920	sequence022:1023..1253(+)	internal_stop_codon	834..836(+),1518..1520(+),858..860(+),1380..1382(+),1251..1253(+)		WP_011389031.1	anaerobic ribonucleoside triphosphate reductase	100.0	10.8	52.6
MGA_208	LOCUS_01930	sequence022:1542..1835(+)	internal_stop_codon	2109..2111(+),1518..1520(+),1833..1835(+),1938..1940(+),1380..1382(+),1251..1253(+)		WP_011389031.1	anaerobic ribonucleoside triphosphate reductase	99.0	14.3	55.2
MGA_209	LOCUS_01940	sequence022:1977..2111(+)	internal_stop_codon	1938..1940(+),2109..2111(+),2262..2264(+),1833..1835(+)		WP_004192163.1	ribonucleoside triphosphate reductase	97.7	7.4	74.4
MGA_211	LOCUS_01960	sequence022:3978..4175(+)	internal_stop_codon	4173..4175(+)		Q8RH17	ribonucleoside-diphosphate reductase subunit beta	78.5	14.7	60.8
MGA_212	LOCUS_01970	sequence022:4320..5024(+)	internal_stop_codon	4173..4175(+)		Q8RH17	ribonucleoside-diphosphate reductase subunit beta	100.0	68.1	51.9
MGA_223	LOCUS_02080	sequence023:3690..4214(-)	internal_stop_codon	4419..4421(-),4371..4373(-),3690..3692(-),3426..3428(-),4362..4364(-)		Q97GL0	phenylalanine--tRNA ligase beta subunit	85.1	19.7	30.1
MGA_224	LOCUS_02090	sequence023:4419..4877(-)	internal_stop_codon	4968..4970(-),4941..4943(-),4419..4421(-),4371..4373(-),4362..4364(-)		Q8RHB5	phenylalanine--tRNA ligase beta subunit	98.7	18.9	37.3
MGA_225	LOCUS_02100	sequence023:4968..5315(-)	internal_stop_codon	4968..4970(-),4941..4943(-)		Q836J5	phenylalanine--tRNA ligase beta subunit	99.1	14.4	45.3
MGA_232	LOCUS_02170	sequence024:3945..4244(+)	internal_stop_codon	4242..4244(+),3720..3722(+),3939..3941(+),4299..4301(+),4446..4448(+),3918..3920(+),3747..3749(+),4497..4499(+),4392..4394(+),3891..3893(+),3780..3782(+)		WP_003101357.1	acetolactate synthase	100.0	17.4	52.5
MGA_233	LOCUS_02180	sequence024:4722..4916(+)	internal_stop_codon	4992..4994(+),5109..5111(+),5103..5105(+),4617..4619(+),4497..4499(+),4446..4448(+),5172..5174(+),4533..4535(+),5136..5138(+),5010..5012(+),5181..5183(+),4914..4916(+)		WP_003101357.1	acetolactate synthase	81.2	9.5	63.5
MGA_236	LOCUS_02200	sequence025:2004..3041(+)	internal_stop_codon	3144..3146(+),3189..3191(+),3039..3041(+)		WP_012583238.1	type II secretion system protein GspE	98.6	38.5	46.2
MGA_244	LOCUS_02280	sequence026:3791..4393(-)	internal_stop_codon	3791..3793(-)		WP_002262828.1	deacetylase	99.0	62.9	31.5
MGA_245	LOCUS_02290	sequence027:679..1050(+)	internal_stop_codon	1048..1050(+)		WP_011020794.1	cysteine--tRNA ligase	82.9	21.6	55.9
MGA_246	LOCUS_02300	sequence027:1099..1449(+)	internal_stop_codon	1048..1050(+),1447..1449(+)		A0A0H3MGC2	cysteine--tRNA ligase	99.1	21.7	44.8
MGA_250	LOCUS_02340	sequence027:2501..3178(+)	internal_stop_codon	3326..3328(+),3386..3388(+),3176..3178(+)		WP_010933175.1	peptidase M48	98.2	53.3	41.2
MGA_251	LOCUS_02350	sequence027:3458..3676(+)	internal_stop_codon	3326..3328(+),3386..3388(+),3176..3178(+)		WP_004189931.1	peptidase M48	86.1	14.7	48.4
MGA_261	LOCUS_02440	sequence029:1148..1555(+)	internal_stop_codon	1664..1666(+),1553..1555(+)		WP_011460248.1	hypothetical protein	54.1	10.5	34.2
MGA_271	LOCUS_02530	sequence030:1327..2130(+)	internal_stop_codon	1321..1323(+),2128..2130(+)		WP_005049106.1	U32 family peptidase	100.0	61.1	49.8
MGA_272	LOCUS_02540	sequence030:2194..2673(+)	internal_stop_codon	2128..2130(+)		WP_011071476.1	U32 family peptidase	93.1	27.9	30.0
MGA_275	LOCUS_02570	sequence030:3655..3921(+)	internal_stop_codon	3481..3483(+),3472..3474(+),3412..3414(+),3625..3627(+),3451..3453(+)		WP_064496414.1	mechanosensitive ion channel protein MscL	100.0	24.4	42.0
MGA_277	LOCUS_02590	sequence031:22..600(+)	internal_stop_codon	598..600(+),700..702(+)		Q816T0	leucine--tRNA ligase	99.5	23.7	68.1
MGA_278	LOCUS_02600	sequence031:784..942(+)	internal_stop_codon	598..600(+),700..702(+),940..942(+)		Q6HCE2	leucine--tRNA ligase	98.1	6.4	54.9
MGA_280	LOCUS_02620	sequence031:1690..1923(+)	internal_stop_codon	2032..2034(+),1921..1923(+)		Q6HCE2	leucine--tRNA ligase	98.7	9.6	57.1
MGA_281	LOCUS_02630	sequence031:2161..2289(+)	internal_stop_codon	2287..2289(+),2296..2298(+),2071..2073(+),2032..2034(+),1921..1923(+)		O51267	leucine--tRNA ligase	100.0	5.0	64.3
MGA_282	LOCUS_02640	sequence031:2455..2835(+)	internal_stop_codon	2287..2289(+),2296..2298(+)		Q9CHB6	leucine--tRNA ligase	100.0	14.8	45.2
MGA_284	LOCUS_02660	sequence031:3197..3883(-)	internal_stop_codon	3965..3967(-)		WP_002859745.1	GTP-binding protein	100.0	38.0	54.1
MGA_285	LOCUS_02670	sequence031:3965..4996(-)	internal_stop_codon	3965..3967(-)		WP_012775504.1	GTP-binding protein	99.1	55.3	55.3
MGA_292	LOCUS_02730	sequence033:934..1533(+)	internal_stop_codon	856..858(+),673..675(+)		A3CQQ6	glutamate--tRNA ligase	99.0	37.9	30.2
MGA_294	LOCUS_02750	sequence033:3884..4063(+)	internal_stop_codon	4061..4063(+),4232..4234(+),4115..4117(+),4067..4069(+)		Q187U6	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	72.9	9.0	76.7
MGA_299	LOCUS_02800	sequence034:2888..3511(+)	internal_stop_codon	3539..3541(+),3554..3556(+),3509..3511(+),3662..3664(+)		Q7VDF7	elongation factor 4	98.1	33.6	60.1
MGA_300	LOCUS_02810	sequence034:3716..4054(+)	internal_stop_codon	3539..3541(+),3554..3556(+),3509..3511(+),4340..4342(+),3662..3664(+),4052..4054(+)		Q9Z8I4	elongation factor 4	90.2	16.8	54.5
MGA_301	LOCUS_02820	sequence035:162..359(-)	internal_stop_codon	555..557(-)		O66648	glutamine--fructose-6-phosphate aminotransferase [isomerizing]	87.7	9.6	52.6
MGA_309	LOCUS_02900	sequence036:1411..1728(+)	internal_stop_codon	1894..1896(+),1726..1728(+),1252..1254(+),1819..1821(+)		Q74D00	phenylalanine--tRNA ligase alpha subunit	98.1	27.4	51.5
MGA_334	LOCUS_03120	sequence040:4154..4528(-)	partial			WP_012804749.1	metal-dependent phosphoesterase	60.5	25.5	38.5
MGA_338	LOCUS_03160	sequence041:2663..2869(+)	internal_stop_codon	3011..3013(+),2618..2620(+),3110..3112(+),2903..2905(+),2474..2476(+),2867..2869(+),3065..3067(+),2423..2425(+)		Q88Y23	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase	95.6	13.2	46.2
MGA_339	LOCUS_03170	sequence041:3293..3508(+)	internal_stop_codon	3227..3229(+),3254..3256(+),3149..3151(+),3263..3265(+),3065..3067(+),3110..3112(+)		Q8R635	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase	100.0	14.2	42.3
MGA_341	LOCUS_03190	sequence041:4145..4333(+)	internal_stop_codon	4331..4333(+),4097..4099(+),3995..3997(+),3905..3907(+)		WP_003421622.1	DNA polymerase III subunit gamma/tau	95.2	10.8	55.9
MGA_344	LOCUS_03210	sequence042:2661..2804(+)	internal_stop_codon	2622..2624(+),2619..2621(+),2802..2804(+)		Q8F376	peptidyl-prolyl cis-trans isomerase	97.9	30.3	63.0
MGA_346	LOCUS_03230	sequence042:3479..3886(+)	partial			WP_000339133.1	peptidyl-prolyl cis-trans isomerase	88.9	31.5	51.7
MGA_348	LOCUS_03250	sequence043:73..468(+)	internal_stop_codon	751..753(+),466..468(+)		Q87M93	cysteine desulfurase	96.2	31.8	45.0
MGA_352	LOCUS_03280	sequence044:110..391(-)	internal_stop_codon	455..457(-)		Q8RGA3	tryptophan--tRNA ligase	87.1	24.9	43.2
MGA_353	LOCUS_03290	sequence044:455..742(-)	internal_stop_codon	455..457(-),1004..1006(-),947..949(-)		Q8RGA3	tryptophan--tRNA ligase	94.7	27.7	64.4
MGA_355	LOCUS_03310	sequence044:1492..1791(-)	internal_stop_codon	1393..1395(-),1492..1494(-),1474..1476(-)		O51039	UPF0118 membrane protein	97.0	29.0	41.0
MGA_358	LOCUS_03340	sequence044:2533..2892(-)	internal_stop_codon	2533..2535(-)		A5I6V7	putative GTP-binding protein EngB	99.2	59.8	44.1
MGA_362	LOCUS_03380	sequence045:545..853(+)	internal_stop_codon	851..853(+),881..883(+)		Q97EX9	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 2	99.0	20.7	52.5
MGA_363	LOCUS_03390	sequence045:911..1213(+)	internal_stop_codon	851..853(+),1307..1309(+),881..883(+),1211..1213(+)		O66766	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	100.0	20.9	63.0
MGA_364	LOCUS_03400	sequence045:1343..1804(+)	internal_stop_codon	1307..1309(+),1802..1804(+),1931..1933(+),1211..1213(+)		Q837V2	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	98.7	31.3	39.1
MGA_373	LOCUS_03490	sequence047:853..2382(-)	partial			WP_011263676.1	methyl-accepting chemotaxis protein	79.2	64.4	28.2
MGA_374	LOCUS_03500	sequence047:2658..2921(-)	internal_stop_codon	2658..2660(-),2619..2621(-)		WP_001139954.1	MarR family transcriptional regulator	97.7	55.9	48.2
MGA_387	LOCUS_03610	sequence049:2667..3662(+)	internal_stop_codon	3660..3662(+)		Q97N35	chromosomal replication initiator protein DnaA	98.5	69.7	39.0
MGA_392	LOCUS_03650	sequence050:3350..3562(-)	internal_stop_codon	3818..3820(-),3737..3739(-)		Q74C56	tyrosine recombinase XerD	97.1	23.1	63.2
MGA_405	LOCUS_03760	sequence052:2662..3120(-)	internal_stop_codon	2419..2421(-),2431..2433(-),2389..2391(-),2662..2664(-),3343..3345(-)		A3CN69	DNA gyrase subunit A	100.0	18.5	51.6
MGA_407	LOCUS_03770	sequence053:78..335(+)	internal_stop_codon	333..335(+)		Q8P7V1	polyribonucleotide nucleotidyltransferase	87.1	10.2	37.8
MGA_408	LOCUS_03780	sequence053:420..1235(+)	internal_stop_codon	333..335(+),1233..1235(+)		Q9X166	polyribonucleotide nucleotidyltransferase	100.0	36.7	36.8
MGA_409	LOCUS_03790	sequence053:1266..1550(+)	internal_stop_codon	1548..1550(+),1233..1235(+)		WP_011460388.1	polyribonucleotide nucleotidyltransferase	96.8	12.5	72.5
MGA_410	LOCUS_03800	sequence053:1560..1886(+)	internal_stop_codon	2079..2081(+),2073..2075(+),1920..1922(+),1884..1886(+),1983..1985(+),1548..1550(+)		WP_000076690.1	polyribonucleotide nucleotidyltransferase	99.1	15.0	49.5
MGA_415	LOCUS_03850	sequence054:1116..1328(-)	internal_stop_codon	1587..1589(-),1455..1457(-)		WP_011023436.1	serine hydroxymethyltransferase	98.6	16.7	50.7
MGA_416	LOCUS_03860	sequence054:1782..2348(-)	internal_stop_codon	1656..1658(-),1782..1784(-),1587..1589(-),1731..1733(-)		Q8EBN8	serine hydroxymethyltransferase	97.3	43.6	67.8
MGA_423	LOCUS_03920	sequence056:1532..1960(-)	frameshift		1509,1534	Q6HDM1	GTPase Era	87.3	41.2	45.2
MGA_427	LOCUS_03960	sequence057:177..617(-)	internal_stop_codon	96..98(-),621..623(-),768..770(-),828..830(-),177..179(-)		A6H1S7	protein RecA	100.0	42.5	70.5
MGA_435	LOCUS_04040	sequence058:1305..2096(+)	internal_stop_codon	2094..2096(+)		Q2RLX5	protein translocase subunit SecA	98.9	29.0	57.7
MGA_436	LOCUS_04050	sequence058:2157..2504(+)	internal_stop_codon	2094..2096(+),2502..2504(+),2649..2651(+)		Q2RLX5	protein translocase subunit SecA	99.1	12.7	65.8
MGA_437	LOCUS_04060	sequence058:2526..2651(+)	internal_stop_codon	2502..2504(+),2649..2651(+)		Q9X1R4	protein translocase subunit SecA	100.0	4.7	85.4
MGA_438	LOCUS_04070	sequence058:2670..3542(+)	internal_stop_codon	2502..2504(+),2649..2651(+)		Q7VUR2	protein translocase subunit SecA	91.7	28.5	32.0
MGA_446	LOCUS_04140	sequence060:1313..1483(+)	internal_stop_codon	1481..1483(+)		O51238	alanine--tRNA ligase	87.5	8.2	53.1
MGA_447	LOCUS_04150	sequence060:1586..1879(+)	internal_stop_codon	1973..1975(+),1481..1483(+),1877..1879(+),2138..2140(+)		P61708	alanine--tRNA ligase	100.0	16.3	56.1
MGA_449	LOCUS_04170	sequence060:2168..2752(+)	internal_stop_codon	2930..2932(+),1973..1975(+),2939..2941(+),2138..2140(+),2750..2752(+)		O51238	alanine--tRNA ligase	97.9	30.8	46.4
MGA_450	LOCUS_04180	sequence060:2984..3133(+)	internal_stop_codon	2930..2932(+),2750..2752(+),2939..2941(+)		O51238	alanine--tRNA ligase	79.6	6.6	69.2
MGA_453	LOCUS_04200	sequence061:2332..2556(-)	internal_stop_codon	2332..2334(-),2311..2313(-),2638..2640(-),2317..2319(-),2596..2598(-),2290..2292(-),2617..2619(-)		O32507	succinate-semialdehyde dehydrogenase [NADP(+)]	100.0	15.5	54.1
MGA_455	LOCUS_04220	sequence061:3166..>3668(-)	internal_stop_codon	2917..2919(-),3007..3009(-),2989..2991(-),3166..3168(-),2977..2979(-)		WP_048064951.1	succinate-semialdehyde dehydrogenase	87.3	31.9	40.0
MGA_464	LOCUS_04310	sequence063:2463..2630(+)	internal_stop_codon	2628..2630(+),2877..2879(+),2904..2906(+),2190..2192(+),2385..2387(+)		Q187T6	DNA mismatch repair protein MutS	94.5	5.5	67.3
MGA_465	LOCUS_04320	sequence063:2667..2879(+)	internal_stop_codon	2628..2630(+),2877..2879(+),2904..2906(+),2970..2972(+),2994..2996(+)		B8E279	DNA mismatch repair protein MutS	100.0	8.2	64.3
MGA_469	LOCUS_04350	sequence064:2779..3018(-)	internal_stop_codon	2773..2775(-),2779..2781(-),2662..2664(-)		WP_001148958.1	A/G-specific adenine glycosylase	81.0	18.3	56.2
MGA_471	LOCUS_04370	sequence065:62..238(+)	internal_stop_codon	254..256(+),236..238(+),29..31(+)		Q8A4A1	30S ribosomal protein S4	91.4	28.4	51.7
MGA_472	LOCUS_04380	sequence065:263..640(+)	internal_stop_codon	254..256(+),236..238(+),29..31(+)		Q18CI6	30S ribosomal protein S4	100.0	56.0	43.2
MGA_473	LOCUS_04390	sequence065:856..1377(+)	internal_stop_codon	784..786(+),751..753(+),1375..1377(+)		Q18CI5	DNA-directed RNA polymerase subunit alpha	94.2	51.4	41.1
MGA_479	LOCUS_04450	sequence066:680..1078(-)	internal_stop_codon	1190..1192(-),1358..1360(-),1343..1345(-),1121..1123(-)		A5I5Q0	ribonucleoside-diphosphate reductase	99.2	17.0	42.7
MGA_480	LOCUS_04460	sequence066:1358..2017(-)	internal_stop_codon	2039..2041(-),1358..1360(-),1343..1345(-),1190..1192(-),1121..1123(-),2108..2110(-)		A5I5Q0	ribonucleoside-diphosphate reductase	100.0	29.5	51.5
MGA_481	LOCUS_04470	sequence066:2108..3292(-)	internal_stop_codon	2039..2041(-),2108..2110(-)		O66503	ribonucleoside-diphosphate reductase subunit alpha	70.8	35.5	39.2
MGA_498	LOCUS_04610	sequence070:1705..2001(-)	internal_stop_codon	2131..2133(-),1705..1707(-),1471..1473(-),1561..1563(-),1498..1500(-)		B0B9I6	bifunctional protein FolD	98.0	33.4	55.2
MGA_512	LOCUS_04720	sequence073:909..1085(-)	internal_stop_codon	1305..1307(-),1113..1115(-),1152..1154(-),1326..1328(-),909..911(-),1362..1364(-)		WP_005903085.1	ABC transporter ATP-binding protein	100.0	9.2	48.3
MGA_513	LOCUS_04730	sequence073:1362..1871(-)	internal_stop_codon	1950..1952(-),1305..1307(-),1113..1115(-),1152..1154(-),1326..1328(-),1362..1364(-)		WP_011476224.1	ABC transporter ATP-binding protein	100.0	26.0	31.4
MGA_518	LOCUS_04780	sequence074:1388..1771(+)	internal_stop_codon	1769..1771(+),1286..1288(+),1820..1822(+)		WP_005814989.1	ribosomal RNA small subunit methyltransferase A	67.7	30.9	39.1
MGA_527	LOCUS_04870	sequence075:2706..3134(+)	internal_stop_codon	3132..3134(+)		WP_011118712.1	mechanosensitive ion channel protein MscS	84.5	22.6	30.8
MGA_536	LOCUS_04960	sequence077:1001..1372(+)	internal_stop_codon	1442..1444(+),1370..1372(+)		Q182T6	pseudouridine synthase	79.7	32.7	37.4
MGA_537	LOCUS_04970	sequence077:1484..1999(+)	internal_stop_codon	1442..1444(+),1370..1372(+)		Q8RDX2	pseudouridine synthase	80.7	40.8	42.9
MGA_540	LOCUS_05000	sequence078:155..1063(+)	internal_stop_codon	1061..1063(+),1166..1168(+)		WP_008766750.1	formate acetyltransferase	99.3	40.6	63.8
MGA_541	LOCUS_05010	sequence078:1289..2341(+)	internal_stop_codon	1061..1063(+),1166..1168(+)		WP_008766750.1	formate acetyltransferase	100.0	47.2	64.6
MGA_542	LOCUS_05020	sequence078:2662..2841(+)	internal_stop_codon	2503..2505(+),3049..3051(+),2962..2964(+),2476..2478(+),3025..3027(+),2470..2472(+),2629..2631(+),2632..2634(+),2620..2622(+),2560..2562(+),2839..2841(+),2458..2460(+),2605..2607(+)		Q64WN9	pyruvate formate-lyase-activating enzyme	98.3	24.1	67.2
MGA_543	LOCUS_05030	sequence079:106..327(-)	partial			Q9CDN0	30S ribosomal protein S18	69.9	63.0	62.7
MGA_555	LOCUS_05140	sequence081:2556..2870(-)	internal_stop_codon	2925..2927(-),3006..3008(-),2556..2558(-),2967..2969(-)		A5I7A1	putative gluconeogenesis factor	95.2	21.6	31.0
MGA_558	LOCUS_05170	sequence082:1952..2224(-)	internal_stop_codon	1952..1954(-),2273..2275(-)		Q18D66	DNA helicase	96.7	10.2	36.8
MGA_559	LOCUS_05180	sequence082:2273..2728(-)	internal_stop_codon	2273..2275(-)		A0A0H3EC82	DNA helicase	66.9	12.1	32.7
MGA_567	LOCUS_05230	sequence084:1639..2169(-)	partial			Q18B61	N utilization substance protein B	68.8	68.0	29.8
MGA_571	LOCUS_05260	sequence085:575..769(-)	internal_stop_codon	575..577(-),851..853(-)		C7MD71	glycine--tRNA ligase	98.4	15.1	50.0
MGA_572	LOCUS_05270	sequence085:851..1513(-)	internal_stop_codon	575..577(-),1613..1615(-),1631..1633(-),851..853(-)		Q97EB8	glycine--tRNA ligase	98.2	45.9	55.1
MGA_580	LOCUS_05340	sequence087:955..1359(+)	internal_stop_codon	1357..1359(+),1504..1506(+),1372..1374(+)		WP_012583239.1	twitching motility protein PilT	94.8	34.7	37.0
MGA_581	LOCUS_05350	sequence087:1387..1506(+)	internal_stop_codon	1504..1506(+),1357..1359(+),1789..1791(+),1753..1755(+),1372..1374(+)		WP_010880449.1	twitching motility protein PilT	94.9	10.1	54.1
MGA_582	LOCUS_05360	sequence087:1546..1755(+)	internal_stop_codon	1504..1506(+),1357..1359(+),1789..1791(+),1753..1755(+),1372..1374(+)		WP_010940905.1	twitching motility protein PilT	100.0	19.4	60.9
MGA_591	LOCUS_05440	sequence089:1929..2120(+)	internal_stop_codon	2118..2120(+),2130..2132(+),2157..2159(+)		WP_011860956.1	penicillin-binding protein	93.7	6.6	40.7
MGA_605	LOCUS_05550	sequence092:969..1160(+)	internal_stop_codon	1296..1298(+),1158..1160(+),1281..1283(+),708..710(+),912..914(+),792..794(+),957..959(+),933..935(+),1338..1340(+),921..923(+),1407..1409(+)		WP_015703926.1	DNA polymerase I	100.0	7.0	50.8
MGA_613	LOCUS_05610	sequence094:2036..2545(+)	internal_stop_codon	1895..1897(+),1874..1876(+),1823..1825(+),2015..2017(+)		Q5ZSA9	cell division protein FtsA	98.8	39.3	37.7
MGA_627	LOCUS_05720	sequence097:872..1336(+)	internal_stop_codon	716..718(+),1334..1336(+)		WP_000429384.1	S1 RNA-binding protein	100.0	19.9	34.0
MGA_628	LOCUS_05730	sequence097:1565..1996(+)	internal_stop_codon	1334..1336(+),1994..1996(+)		WP_011107669.1	RNA-binding transcriptional accessory protein	100.0	20.7	47.3
MGA_629	LOCUS_05740	sequence097:2003..2728(+)	internal_stop_codon	1994..1996(+)		WP_011674441.1	S1 RNA-binding protein	98.8	35.0	42.9
MGA_635	LOCUS_05780	sequence099:252..506(-)	internal_stop_codon	540..542(-),252..254(-),759..761(-),720..722(-),648..650(-),693..695(-)		Q727E1	peptide chain release factor 1	94.0	22.1	59.5
MGA_636	LOCUS_05790	sequence099:759..1118(-)	internal_stop_codon	540..542(-),759..761(-),720..722(-),648..650(-),693..695(-)		Q180Y2	peptide chain release factor 1	100.0	33.6	42.9
MGA_648	LOCUS_05900	sequence101:1673..1888(-)	internal_stop_codon	1673..1675(-),1664..1666(-)		WP_014748664.1	cysteine synthase A	98.6	28.8	45.1
MGA_660	LOCUS_05990	sequence104:454..606(+)	internal_stop_codon	604..606(+),418..420(+),316..318(+)		Q88UX7	valine--tRNA ligase	100.0	5.6	58.0
MGA_661	LOCUS_06000	sequence104:610..927(+)	internal_stop_codon	1069..1071(+),604..606(+),418..420(+),925..927(+),1144..1146(+)		Q3Y009	valine--tRNA ligase	95.2	11.1	60.0
MGA_664	LOCUS_06030	sequence104:1762..2166(+)	internal_stop_codon	1498..1500(+),1543..1545(+),1708..1710(+),2164..2166(+),1720..1722(+)		Q180A1	valine--tRNA ligase	96.3	14.4	39.6
MGA_668	LOCUS_06070	sequence105:2440..2661(-)	internal_stop_codon	2428..2430(-),2440..2442(-)		WP_005902960.1	histidine triad nucleotide-binding protein	97.3	63.4	56.3
MGA_672	LOCUS_06100	sequence106:1341..1553(-)	internal_stop_codon	1560..1562(-)		A0A0H3G1D6	glutamate dehydrogenase	94.3	15.6	47.0
MGA_673	LOCUS_06110	sequence106:1560..1835(-)	internal_stop_codon	2046..2048(-),1560..1562(-),1875..1877(-),1938..1940(-),1836..1838(-),2037..2039(-),1890..1892(-),2094..2096(-),1857..1859(-)		Q73P03	glutamate dehydrogenase	100.0	22.3	52.2
MGA_676	LOCUS_06130	sequence107:137..448(+)	internal_stop_codon	464..466(+),446..448(+),458..460(+)		Q7V9N3	DNA gyrase subunit B	98.1	15.3	70.3
MGA_677	LOCUS_06140	sequence107:530..802(+)	internal_stop_codon	464..466(+),446..448(+),458..460(+),920..922(+),800..802(+)		Q81JD1	DNA gyrase subunit B	100.0	14.2	48.4
MGA_678	LOCUS_06150	sequence107:983..1180(+)	internal_stop_codon	1178..1180(+),800..802(+),1427..1429(+),920..922(+)		Q8G6K5	DNA gyrase subunit B	96.9	9.1	69.8
MGA_679	LOCUS_06160	sequence107:1286..1429(+)	internal_stop_codon	1178..1180(+),1427..1429(+),1574..1576(+)		A0A0H2WHD0	DNA gyrase subunit B	97.9	5.6	71.7
MGA_680	LOCUS_06170	sequence107:1622..1924(+)	internal_stop_codon	1427..1429(+),1574..1576(+),1922..1924(+)		A5HXQ2	DNA gyrase subunit B	100.0	16.0	64.7
MGA_681	LOCUS_06180	sequence108:41..208(-)	internal_stop_codon	407..409(-),41..43(-),212..214(-)		WP_011707238.1	arylesterase	94.5	26.1	42.3
MGA_682	LOCUS_06190	sequence108:812..1162(+)	internal_stop_codon	1253..1255(+),1199..1201(+),1160..1162(+)		WP_011948368.1	ATP-dependent RNA helicase RhlE	100.0	26.1	50.9
MGA_683	LOCUS_06200	sequence108:1259..1846(+)	internal_stop_codon	1199..1201(+),1844..1846(+),1253..1255(+),1976..1978(+),1160..1162(+)		WP_005786517.1	DEAD/DEAH box family ATP-dependent RNA helicase	100.0	45.7	45.1
MGA_685	LOCUS_06220	sequence109:230..361(-)	internal_stop_codon	434..436(-),605..607(-),230..232(-),614..616(-)		WP_003022262.1	deoxyribonuclease	97.7	16.5	71.4
MGA_692	LOCUS_06280	sequence111:1982..2290(-)	internal_stop_codon	2321..2323(-),2426..2428(-),1919..1921(-),1982..1984(-)		WP_010868400.1	ATPase	92.2	30.6	47.9
MGA_693	LOCUS_06290	sequence111:2426..2575(-)	internal_stop_codon	2606..2608(-),2651..2653(-),2426..2428(-),2585..2587(-),2321..2323(-)		WP_002556774.1	ATPase	100.0	14.8	57.1
MGA_700	LOCUS_06330	sequence113:243..545(-)	internal_stop_codon	153..155(-),243..245(-)		Q2S0H7	DNA gyrase subunit A	63.0	6.9	68.3
MGA_701	LOCUS_06340	sequence113:693..884(+)	internal_stop_codon	957..959(+),924..926(+),936..938(+),882..884(+)		WP_010868819.1	glucose-1-phosphate thymidylyltransferase	96.8	14.6	60.7
MGA_703	LOCUS_06360	sequence113:1944..2156(-)	internal_stop_codon	2193..2195(-)		Q3IXY1	50S ribosomal protein L27	100.0	69.7	50.0
MGA_712	LOCUS_06440	sequence115:594..770(+)	internal_stop_codon	801..803(+),420..422(+),768..770(+),534..536(+),804..806(+),912..914(+),1017..1019(+)		WP_015776105.1	glycosyl transferase	96.6	23.0	44.6
MGA_715	LOCUS_06460	sequence116:144..362(-)	internal_stop_codon	462..464(-),384..386(-),372..374(-),399..401(-),531..533(-),408..410(-),501..503(-),552..554(-)		O25235	phospho-N-acetylmuramoyl-pentapeptide-transferase	98.6	19.8	43.7
MGA_734	LOCUS_06630	sequence120:738..929(-)	internal_stop_codon	738..740(-),462..464(-),1095..1097(-),1029..1031(-),615..617(-)		WP_010978681.1	radical SAM protein	100.0	13.4	52.4
MGA_739	LOCUS_06670	sequence121:1285..1698(+)	internal_stop_codon	1279..1281(+),1249..1251(+),1267..1269(+),1696..1698(+)		WP_012258059.1	hypothetical protein	99.3	30.9	40.7
MGA_744	LOCUS_06720	sequence123:932..1588(+)	internal_stop_codon	1586..1588(+),1610..1612(+)		Q9ZCW8	protein translocase subunit SecD	100.0	42.1	41.3
MGA_749	LOCUS_06750	sequence125:912..1031(+)	internal_stop_codon	1122..1124(+),1029..1031(+),1134..1136(+),1275..1277(+),1059..1061(+),891..893(+)		B5YKU2	DNA primase	100.0	6.5	59.0
MGA_761	LOCUS_06850	sequence128:1054..1224(-)	internal_stop_codon	1459..1461(-),1453..1455(-),1054..1056(-),838..840(-),1309..1311(-),898..900(-)		A6H115	DNA topoisomerase 1	98.2	6.4	50.9
MGA_763	LOCUS_06870	sequence128:2128..2298(-)	internal_stop_codon	1948..1950(-),2116..2118(-),2128..2130(-),1894..1896(-),2347..2349(-)		Q8A3X7	DNA topoisomerase 1	98.2	7.0	58.2
MGA_765	LOCUS_06880	sequence129:470..772(+)	internal_stop_codon	1010..1012(+),245..247(+),188..190(+),770..772(+),230..232(+),275..277(+),305..307(+)		WP_011459944.1	NAD-dependent malic enzyme	85.0	20.6	59.3
MGA_766	LOCUS_06890	sequence129:842..1012(+)	internal_stop_codon	1010..1012(+),770..772(+)		WP_011948041.1	malate dehydrogenase	100.0	14.4	80.4
MGA_768	LOCUS_06910	sequence129:1207..1578(-)	internal_stop_codon	1669..1671(-)		Q9KXP2	histidine--tRNA ligase	87.0	25.2	26.2
MGA_769	LOCUS_06920	sequence129:1669..1980(-)	internal_stop_codon	1669..1671(-),2014..2016(-)		Q833I1	histidine--tRNA ligase	88.3	20.8	40.7
MGA_776	LOCUS_06990	sequence131:421..714(-)	internal_stop_codon	721..723(-)		Q9ZCU4	isoleucine--tRNA ligase	99.0	8.7	39.6
MGA_777	LOCUS_07000	sequence131:721..1359(-)	internal_stop_codon	721..723(-),1585..1587(-)		Q182V2	isoleucine--tRNA ligase	85.4	17.8	41.8
MGA_778	LOCUS_07010	sequence131:1585..1767(-)	internal_stop_codon	1894..1896(-),1585..1587(-)		O84022	isoleucine--tRNA ligase	96.7	5.6	65.5
MGA_779	LOCUS_07020	sequence131:1894..>2526(-)	internal_stop_codon	1894..1896(-)		Q73JB2	isoleucine--tRNA ligase	95.2	16.4	44.8
MGA_787	LOCUS_07080	sequence133:722..1150(-)	internal_stop_codon	1409..1411(-),722..724(-),674..676(-)		WP_003732117.1	ATP-dependent DNA helicase RecQ	90.8	19.7	24.0
MGA_788	LOCUS_07090	sequence133:1409..1609(-)	internal_stop_codon	1409..1411(-),1613..1615(-),1826..1828(-)		WP_011122787.1	helicase	98.5	6.5	70.8
MGA_790	LOCUS_07110	sequence133:1826..2056(-)	internal_stop_codon	2294..2296(-),1613..1615(-),2252..2254(-),2102..2104(-),2183..2185(-),2330..2332(-),1826..1828(-)		WP_016362014.1	ATP-dependent DNA helicase RecQ2	92.1	10.6	60.6
MGA_793	LOCUS_07140	sequence134:1820..>2494(-)	internal_stop_codon	1709..1711(-),1820..1822(-),1724..1726(-),1754..1756(-),1580..1582(-),1592..1594(-),1670..1672(-),1664..1666(-)		WP_005814514.1	two-component sensor histidine kinase	67.4	37.5	24.8
MGA_797	LOCUS_07170	sequence135:998..1138(+)	internal_stop_codon	1202..1204(+),995..997(+),1217..1219(+),1136..1138(+),1268..1270(+),1295..1297(+)		Q0PA12	DNA translocase FtsK	100.0	4.9	67.4
MGA_798	LOCUS_07180	sequence135:1298..1882(+)	internal_stop_codon	1217..1219(+),2027..2029(+),1202..1204(+),1136..1138(+),2093..2095(+),1268..1270(+),1880..1882(+),1295..1297(+)		WP_003388321.1	DNA translocase FtsK	100.0	25.9	59.9
MGA_802	LOCUS_07220	sequence136:1403..1825(-)	internal_stop_codon	1343..1345(-),1835..1837(-),1373..1375(-),1346..1348(-),2105..2107(-),1955..1957(-),1403..1405(-)		WP_000277803.1	glycosyl transferase	95.0	33.5	36.6
MGA_805	LOCUS_07240	sequence137:1111..1404(+)	internal_stop_codon	1435..1437(+),1504..1506(+),1495..1497(+),1402..1404(+),1534..1536(+)		WP_001248640.1	hypothetical protein	87.6	26.4	55.3
MGA_810	LOCUS_07290	sequence139:271..705(-)	internal_stop_codon	751..753(-)		Q63TQ0	tRNA pseudouridine synthase B	46.5	21.5	47.8
MGA_813	LOCUS_07320	sequence139:1349..1837(-)	partial			Q18BJ6	signal peptidase I	79.6	71.6	33.1
MGA_814	LOCUS_07330	sequence140:864..1040(-)	internal_stop_codon	864..866(-),1071..1073(-),789..791(-)		WP_000190138.1	2-oxoacid:ferredoxin oxidoreductase subunit beta	100.0	20.1	56.9
MGA_817	LOCUS_07360	sequence140:1729..2139(-)	internal_stop_codon	2197..2199(-),2152..2154(-),1729..1731(-)		WP_011249768.1	2-oxoacid:ferredoxin oxidoreductase subunit alpha	97.8	23.3	45.7
MGA_842	LOCUS_07530	sequence148:1556..1786(-)	internal_stop_codon	1556..1558(-),1832..1834(-)		Q8R679	glutamyl-tRNA(Gln) amidotransferase subunit A	100.0	15.4	48.7
MGA_843	LOCUS_07540	sequence148:1832..2038(-)	internal_stop_codon	2132..2134(-),1556..1558(-),2117..2119(-),1832..1834(-)		Q8R679	glutamyl-tRNA(Gln) amidotransferase subunit A	100.0	13.8	48.5
MGA_846	LOCUS_07550	sequence149:619..831(+)	internal_stop_codon	964..966(+),529..531(+),1081..1083(+),940..942(+),829..831(+)		I7FK74	DNA helicase	100.0	10.4	60.6
MGA_847	LOCUS_07560	sequence149:1387..1734(+)	internal_stop_codon	1303..1305(+),1732..1734(+),1183..1185(+)		Q7UIR9	DNA helicase	100.0	14.6	31.9
MGA_852	LOCUS_07590	sequence150:1505..2068(+)	internal_stop_codon	2066..2068(+),2081..2083(+),2096..2098(+)		Q92MA7	pseudouridine synthase	97.9	53.6	37.0
MGA_854	LOCUS_07610	sequence151:90..992(-)	internal_stop_codon	1002..1004(-)		Q182W6	GTPase Der	91.7	60.8	43.3
MGA_855	LOCUS_07620	sequence151:1284..1466(-)	partial			Q1WTU6	GTPase Era	88.3	17.7	49.1
MGA_869	LOCUS_07730	sequence154:1935..2192(-)	partial			Q64QS2	histidine--tRNA ligase	95.3	17.6	45.7
MGA_874	LOCUS_07770	sequence156:1343..1585(+)	frameshift,internal_stop_codon	1592..1594(+)	1573,1630	WP_011986918.1	dihydroorotate dehydrogenase	95.0	23.5	38.2
MGA_876	LOCUS_07790	sequence156:1865..2122(+)	partial			WP_011674064.1	Mg2+ and Co2+ transporter	91.8	25.8	32.1
MGA_882	LOCUS_07840	sequence158:930..1214(-)	internal_stop_codon	1290..1292(-),1404..1406(-),930..932(-),801..803(-)		Q038M5	translation initiation factor IF-2	97.9	9.8	59.8
MGA_883	LOCUS_07850	sequence158:1404..1727(-)	internal_stop_codon	1290..1292(-),1404..1406(-)		Q83BS1	translation initiation factor IF-2	99.1	12.3	59.4
MGA_886	LOCUS_07870	sequence159:1623..1802(+)	internal_stop_codon	1512..1514(+),1866..1868(+),1590..1592(+),1497..1499(+),1800..1802(+),1896..1898(+),1545..1547(+),1476..1478(+),1353..1355(+),2007..2009(+),1575..1577(+),1452..1454(+),1383..1385(+)		P55989	copper-transporting ATPase	98.3	7.8	51.7
MGA_889	LOCUS_07880	sequence160:225..470(+)	internal_stop_codon	96..98(+),468..470(+),117..119(+),162..164(+),510..512(+)		WP_011964481.1	ABC transporter ATP-binding protein	97.5	30.9	40.5
MGA_891	LOCUS_07900	sequence160:1168..1428(+)	internal_stop_codon	1525..1527(+),1492..1494(+),1426..1428(+)		WP_010888737.1	Fe-S cluster assembly protein SufB	100.0	18.8	43.2
MGA_892	LOCUS_07910	sequence160:1609..1752(+)	internal_stop_codon	2041..2043(+),1492..1494(+),1525..1527(+),1750..1752(+),1426..1428(+)		WP_004081565.1	Fe-S cluster assembly protein SufB	80.9	8.2	71.1
MGA_893	LOCUS_07920	sequence160:1753..2043(+)	internal_stop_codon	2041..2043(+),1492..1494(+),1525..1527(+),1750..1752(+),2095..2097(+)		WP_002669913.1	Fe-S cluster assembly protein SufB	100.0	19.7	63.5
MGA_894	LOCUS_07930	sequence161:54..407(+)	internal_stop_codon	405..407(+),498..500(+),549..551(+),459..461(+)		O05956	endonuclease III	90.6	51.9	43.6
MGA_907	LOCUS_08050	sequence164:1401..1823(+)	internal_stop_codon	1311..1313(+)		Q8RFJ5	protein-export membrane protein SecF	83.6	35.3	45.3
MGA_912	LOCUS_08090	sequence166:642..818(+)	internal_stop_codon	957..959(+),954..956(+),816..818(+)		WP_003547935.1	geranyltranstransferase	67.2	13.5	61.5
MGA_923	LOCUS_08180	sequence170:113..400(-)	internal_stop_codon	431..433(-),602..604(-)		Q8RG56	DNA mismatch repair protein MutL	100.0	13.8	32.6
MGA_925	LOCUS_08200	sequence170:944..1159(-)	internal_stop_codon	1394..1396(-),1217..1219(-),1262..1264(-)		Q6HF47	DNA mismatch repair protein MutL	95.8	10.5	41.2
MGA_926	LOCUS_08210	sequence170:1802..1921(-)	internal_stop_codon	1763..1765(-),1766..1768(-),1661..1663(-),1802..1804(-)		Q5E2C6	DNA mismatch repair protein MutL	100.0	5.9	79.5
MGA_933	LOCUS_08270	sequence174:133..642(+)	internal_stop_codon	751..753(+),640..642(+),109..111(+)		WP_011021199.1	mannosyltransferase	66.3	30.9	33.9
MGA_943	LOCUS_08340	sequence177:1023..1253(+)	internal_stop_codon	1020..1022(+),1251..1253(+)		Q1WTY1	ribosomal RNA small subunit methyltransferase E	85.5	28.0	48.5
MGA_951	LOCUS_08390	sequence180:63..737(-)	partial			YP_002346507.1	ABC-F family ATPase	71.0	30.7	37.4
MGA_959	LOCUS_08450	sequence183:286..408(-)	internal_stop_codon	577..579(-)		WP_001101673.1	NAD(P)H dehydrogenase (quinone)	97.5	20.4	56.4
MGA_972	LOCUS_08550	sequence186:244..846(-)	internal_stop_codon	244..246(-),133..135(-),868..870(-)		B8E0X3	putative dual-specificity RNA methyltransferase RlmN	98.5	56.3	48.2
MGA_978	LOCUS_08590	sequence188:1078..1545(-)	internal_stop_codon	1564..1566(-)		WP_010966351.1	glycosyl transferase	76.8	34.9	27.1
MGA_994	LOCUS_08690	sequence193:1033..1245(-)	internal_stop_codon	1033..1035(-),1432..1434(-),1255..1257(-),844..846(-),871..873(-),808..810(-),916..918(-)		P37282	60 kDa chaperonin	100.0	12.9	50.0
MGA_995	LOCUS_08700	sequence193:1255..1404(-)	internal_stop_codon	1033..1035(-),1432..1434(-),1627..1629(-),1666..1668(-),1657..1659(-),1255..1257(-)		Q9KXU5	60 kDa chaperonin 2	100.0	9.1	44.9
MGA_996	LOCUS_08710	sequence193:1432..1626(-)	internal_stop_codon	1255..1257(-),1432..1434(-),1705..1707(-),1627..1629(-),1666..1668(-),1657..1659(-),1735..1737(-)		Q9WYX6	60 kDa chaperonin	95.3	11.3	63.9
MGA_1002	LOCUS_08760	sequence196:1134..1442(-)	partial			WP_015775846.1	fructose 1,6-bisphosphatase	79.4	38.6	37.0
MGA_1006	LOCUS_08790	sequence197:886..1281(+)	internal_stop_codon	1399..1401(+),1471..1473(+),1561..1563(+),1279..1281(+),1501..1503(+)		Q05852	UTP--glucose-1-phosphate uridylyltransferase	97.7	43.8	60.2
MGA_1016	LOCUS_08860	sequence200:717..1130(+)	internal_stop_codon	1254..1256(+),1128..1130(+)		WP_005816337.1	RNA polymerase sigma factor RpoD	98.5	37.5	42.2
MGA_1017	LOCUS_08870	sequence200:1308..1502(+)	internal_stop_codon	1254..1256(+),1128..1130(+),1500..1502(+),1644..1646(+)		WP_005816337.1	RNA polymerase sigma factor RpoD	100.0	16.3	50.0
MGA_1024	LOCUS_08910	sequence203:510..680(-)	partial			WP_002216405.1	type II secretion system protein F	94.6	12.9	45.3
MGA_1031	LOCUS_08970	sequence205:156..317(+)	internal_stop_codon	63..65(+),315..317(+)		WP_011228016.1	TlyA family rRNA (cytidine-2'-O)-methyltransferase	98.1	22.1	55.8
MGA_1035	LOCUS_09010	sequence207:64..270(+)	internal_stop_codon	343..345(+),268..270(+),415..417(+)		WP_005482406.1	sodium-independent anion transporter	82.4	10.6	75.0
MGA_1037	LOCUS_09030	sequence207:1117..1644(+)	internal_stop_codon	1027..1029(+),898..900(+),961..963(+)		WP_005482406.1	sodium-independent anion transporter	99.4	33.3	50.6
MGA_1052	LOCUS_09120	sequence212:938..1123(-)	internal_stop_codon	1178..1180(-),1220..1222(-)		WP_012583200.1	macrolide ABC transporter ATP-binding protein	95.1	24.7	51.7
MGA_1053	LOCUS_09130	sequence212:1220..1450(-)	internal_stop_codon	1487..1489(-),1178..1180(-),1220..1222(-)		WP_012709725.1	ABC transporter ATP-binding protein	90.8	28.6	42.0
MGA_1056	LOCUS_09140	sequence214:466..627(-)	internal_stop_codon	385..387(-),850..852(-),670..672(-),790..792(-),688..690(-),286..288(-),466..468(-)		Q9RYM2	ATP-dependent zinc metalloprotease FtsH	100.0	8.1	66.0
MGA_1057	LOCUS_09150	sequence214:928..1164(-)	internal_stop_codon	928..930(-),850..852(-),670..672(-),790..792(-),688..690(-)		A5I7Q0	ATP-dependent zinc metalloprotease FtsH	71.8	9.3	53.6
MGA_1064	LOCUS_09200	sequence217:627..764(+)	internal_stop_codon	951..953(+),909..911(+),993..995(+),762..764(+),1026..1028(+),807..809(+),1032..1034(+)		Q6MTD4	adenine phosphoribosyltransferase	100.0	26.5	62.2
MGA_1086	LOCUS_09370	sequence224:218..493(+)	internal_stop_codon	587..589(+),521..523(+),491..493(+),83..85(+)		O67298	methionine--tRNA ligase	70.3	13.3	48.5
MGA_1087	LOCUS_09380	sequence224:605..967(+)	internal_stop_codon	521..523(+),587..589(+),965..967(+),491..493(+)		Q9PP85	methionine--tRNA ligase	83.3	15.1	41.0
MGA_1089	LOCUS_09400	sequence225:213..590(-)	internal_stop_codon	186..188(-),213..215(-),873..875(-),879..881(-)		Q6HAG1	ribosome-binding ATPase YchF	97.6	34.2	48.8
MGA_1091	LOCUS_09420	sequence225:879..1124(-)	internal_stop_codon	873..875(-),879..881(-)		Q8RDX8	ribosome-binding ATPase YchF	96.3	21.4	69.2
MGA_1102	LOCUS_09450	sequence231:236..370(+)	internal_stop_codon	569..571(+),368..370(+),422..424(+),458..460(+)		Q183P1	queuine tRNA-ribosyltransferase	93.2	11.0	63.4
MGA_1103	LOCUS_09460	sequence231:584..754(+)	internal_stop_codon	1004..1006(+),368..370(+),569..571(+),422..424(+),458..460(+),953..955(+),1019..1021(+),827..829(+),923..925(+),752..754(+),965..967(+)		Q64TX9	queuine tRNA-ribosyltransferase	100.0	13.8	51.8
MGA_1104	LOCUS_09470	sequence231:1040..1168(+)	internal_stop_codon	1004..1006(+),1019..1021(+),953..955(+),923..925(+),827..829(+),752..754(+),965..967(+),1166..1168(+)		P44594	queuine tRNA-ribosyltransferase	100.0	11.0	61.9
MGA_1107	LOCUS_09490	sequence232:420..608(-)	internal_stop_codon	816..818(-),411..413(-),420..422(-),828..830(-),393..395(-),648..650(-),414..416(-)		WP_012546477.1	citrate transporter	71.0	7.8	53.3
MGA_1110	LOCUS_09510	sequence233:382..690(+)	internal_stop_codon	145..147(+),271..273(+),760..762(+),796..798(+),856..858(+),688..690(+),295..297(+),871..873(+),352..354(+)		A6GWI1	DNA-directed DNA polymerase	99.0	6.6	53.5
MGA_1111	LOCUS_09520	sequence233:910..1077(+)	internal_stop_codon	1075..1077(+),1195..1197(+),760..762(+),796..798(+),856..858(+),1330..1332(+),871..873(+),1093..1095(+),1240..1242(+)		Q9PPI9	DNA polymerase III subunit alpha	100.0	4.6	49.1
MGA_1112	LOCUS_09530	sequence234:197..>1483(-)	partial			P30721	chaperone protein DnaK	99.1	69.3	54.0
MGA_1140	LOCUS_09710	sequence244:289..1107(+)	internal_stop_codon	1105..1107(+)		O51773	isoleucine--tRNA ligase	100.0	26.1	57.1
MGA_1142	LOCUS_09720	sequence245:60..578(+)	partial			WP_009873587.1	translation factor Sua5	83.7	47.0	27.2
MGA_1149	LOCUS_09760	sequence248:1126..1287(-)	internal_stop_codon	1324..1326(-)		WP_011167164.1	membrane protein	98.1	11.7	46.2
MGA_1156	LOCUS_09800	sequence251:634..816(-)	partial			WP_005168081.1	transporter	91.7	67.1	63.6
MGA_1163	LOCUS_09850	sequence253:954..1121(-)	frameshift,internal_stop_codon	804..806(-),677..679(-),954..956(-),1122..1124(-),765..767(-),885..887(-),891..893(-),1260..1262(-),921..923(-)	737,700	Q182P8	ATP-dependent DNA helicase RecG	100.0	8.0	49.1
MGA_1169	LOCUS_09880	sequence255:836..982(+)	internal_stop_codon	833..835(+),671..673(+)		WP_012583255.1	UDP-phosphate galactose phosphotransferase	85.4	9.0	56.1
MGA_1183	LOCUS_09970	sequence261:496..618(-)	internal_stop_codon	634..636(-),706..708(-)		WP_011949043.1	exodeoxyribonuclease III	97.5	15.4	56.4
MGA_1184	LOCUS_09980	sequence261:706..990(-)	internal_stop_codon	706..708(-),1135..1137(-),634..636(-)		WP_010875851.1	exodeoxyribonuclease III	95.7	33.9	50.0
MGA_1191	LOCUS_10020	sequence265:13..693(-)	internal_stop_codon	727..729(-),769..771(-)		A6H294	GTPase HflX	98.7	52.3	38.9
MGA_1193	LOCUS_10040	sequence267:44..334(-)	internal_stop_codon	356..358(-)		Q18B36	acetate kinase	100.0	24.1	49.0
MGA_1194	LOCUS_10050	sequence267:356..1228(-)	internal_stop_codon	356..358(-)		WP_011460506.1	acetate kinase	100.0	73.4	60.1
MGA_1235	LOCUS_10320	sequence291:413..610(-)	internal_stop_codon	413..415(-),677..679(-),344..346(-)		WP_002263884.1	RNA methyltransferase	98.5	16.7	70.3
MGA_1248	LOCUS_10400	sequence297:355..894(-)	partial			WP_002855880.1	signal transduction histidine kinase	63.1	65.2	41.6
MGA_1254	LOCUS_10450	sequence300:180..407(-)	internal_stop_codon	180..182(-),30..32(-)		Q9WY48	ATP-dependent DNA helicase RecG	80.0	7.9	46.8