# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_1	LOCUS_0010	sequence001:230..385(-)	internal_stop_codon	230..232(-)		A9WH75	30S ribosomal protein S17	92.2	52.8	57.4
MGA_3	LOCUS_0030	sequence001:1107..1253(-)	internal_stop_codon	1287..1289(-),1371..1373(-),1278..1280(-)		F0KF87	30S ribosomal protein S3	97.9	17.7	61.7
MGA_6	LOCUS_0060	sequence001:3642..3983(-)	internal_stop_codon	4224..4226(-),4056..4058(-),4104..4106(-),4008..4010(-),4236..4238(-),4194..4196(-)		A9WH67	50S ribosomal protein L4	89.4	47.3	32.4
MGA_9	LOCUS_0090	sequence001:11771..11917(+)	internal_stop_codon	11945..11947(+),12029..12031(+),11915..11917(+),12116..12118(+)		Q819U1	methionyl-tRNA formyltransferase	89.6	13.7	53.5
MGA_11	LOCUS_0110	sequence001:15663..16013(+)	internal_stop_codon	16011..16013(+)		C7MFG3	elongation factor G	97.4	15.8	82.3
MGA_12	LOCUS_0120	sequence001:16071..17177(+)	internal_stop_codon	16011..16013(+),17175..17177(+),17301..17303(+)		Q6F0J4	elongation factor G	100.0	52.5	57.6
MGA_13	LOCUS_0130	sequence001:17385..17807(+)	internal_stop_codon	17175..17177(+),17301..17303(+)		Q9PI16	elongation factor G	92.9	18.8	66.9
MGA_15	LOCUS_0150	sequence001:18251..19177(-)	internal_stop_codon	19433..19435(-)		P58949	3-isopropylmalate dehydratase large subunit	35.1	22.5	68.5
MGA_16	LOCUS_0160	sequence001:19433..20257(-)	internal_stop_codon	19433..19435(-)		Q884C2	3-isopropylmalate dehydratase large subunit	97.8	57.3	52.2
MGA_17	LOCUS_0170	sequence001:21431..21667(+)	internal_stop_codon	21260..21262(+),21179..21181(+),21728..21730(+),21941..21943(+),21665..21667(+),21710..21712(+),21239..21241(+),21866..21868(+)		O31774	ribonuclease Y	97.4	14.6	40.8
MGA_26	LOCUS_0260	sequence001:33899..34090(-)	internal_stop_codon	34361..34363(-),34244..34246(-),34175..34177(-),33854..33856(-),33899..33901(-),34124..34126(-)		Q746Y7	glutamyl-tRNA(Gln) amidotransferase subunit A	100.0	13.0	68.3
MGA_27	LOCUS_0270	sequence001:34409..34684(-)	internal_stop_codon	34742..34744(-),34361..34363(-),34409..34411(-),34244..34246(-),34175..34177(-),34709..34711(-),34781..34783(-),34124..34126(-)		Q8R679	glutamyl-tRNA(Gln) amidotransferase subunit A	96.7	17.9	52.3
MGA_28	LOCUS_0280	sequence001:34781..35197(-)	internal_stop_codon	34709..34711(-),34742..34744(-),34781..34783(-)		Q7VCJ0	glutamyl-tRNA(Gln) amidotransferase subunit A	97.1	29.8	43.4
MGA_29	LOCUS_0290	sequence001:35396..36250(+)	partial			WP_011181466.1	hypothetical protein	65.8	77.5	34.7
MGA_30	LOCUS_0300	sequence002:1..228(+)	partial			Q8P7Z4	50S ribosomal protein L20	81.3	51.3	60.7
MGA_31	LOCUS_0310	sequence002:975..1313(+)	internal_stop_codon	777..779(+),843..845(+),924..926(+),876..878(+)		Q8F812	aspartate carbamoyltransferase	100.0	36.0	50.9
MGA_32	LOCUS_0320	sequence002:1840..2277(+)	internal_stop_codon	2314..2316(+),2275..2277(+),2446..2448(+),2494..2496(+)		Q6HPS0	50S ribosomal protein L1	98.6	61.7	54.2
MGA_35	LOCUS_0350	sequence002:3896..4288(-)	internal_stop_codon	3719..3721(-),4391..4393(-),3896..3898(-),4298..4300(-)		Q1WR13	cysteine desulfurase	96.9	28.6	37.3
MGA_36	LOCUS_0360	sequence002:4391..4624(-)	internal_stop_codon	4391..4393(-),4298..4300(-)		Q9CEP5	cysteine desulfurase	93.5	18.5	48.0
MGA_38	LOCUS_0380	sequence002:7182..7523(-)	internal_stop_codon	7143..7145(-),6957..6959(-),7182..7184(-)		WP_010888737.1	Fe-S cluster assembly protein SufB	91.2	21.8	46.6
MGA_41	LOCUS_0410	sequence002:8757..8966(-)	internal_stop_codon	8994..8996(-),8757..8759(-),8754..8756(-),9006..9008(-)		WP_002672329.1	ABC transporter ATP-binding protein	98.6	27.6	50.0
MGA_45	LOCUS_0450	sequence002:12980..13483(+)	internal_stop_codon	13631..13633(+),12965..12967(+),13595..13597(+),13481..13483(+)		WP_011460674.1	glycine dehydrogenase	100.0	33.7	51.5
MGA_46	LOCUS_0460	sequence002:13634..13864(+)	internal_stop_codon	13631..13633(+),13595..13597(+),13481..13483(+),13862..13864(+)		Q2RPV2	glycine dehydrogenase (aminomethyl-transferring)	98.7	14.7	54.7
MGA_47	LOCUS_0470	sequence002:13874..14116(+)	internal_stop_codon	13631..13633(+),13862..13864(+)		Q2RPV2	glycine dehydrogenase (aminomethyl-transferring)	91.2	14.5	56.2
MGA_48	LOCUS_0480	sequence002:14248..14580(+)	internal_stop_codon	14578..14580(+)		Q9A353	putative glycine dehydrogenase (decarboxylating) subunit 1	97.3	23.9	51.4
MGA_49	LOCUS_0490	sequence002:14581..14784(+)	internal_stop_codon	15064..15066(+),14578..14580(+),14782..14784(+)		Q5ZZ95	putative glycine dehydrogenase (decarboxylating) subunit 1	88.1	13.4	52.5
MGA_51	LOCUS_0510	sequence002:16989..17255(-)	internal_stop_codon	17478..17480(-),16989..16991(-),16920..16922(-),17274..17276(-),17340..17342(-),17481..17483(-),16863..16865(-)		WP_011462178.1	hypothetical protein	100.0	18.6	43.8
MGA_53	LOCUS_0530	sequence002:19070..19243(-)	internal_stop_codon	18875..18877(-),19070..19072(-),19034..19036(-),18932..18934(-),19244..19246(-),19385..19387(-)		Q9ZCA4	alanine--tRNA ligase	100.0	6.5	49.1
MGA_54	LOCUS_0540	sequence002:19385..19597(-)	internal_stop_codon	19652..19654(-),19826..19828(-),19385..19387(-),19244..19246(-)		P61708	alanine--tRNA ligase	94.3	10.8	57.4
MGA_55	LOCUS_0550	sequence002:19826..20041(-)	internal_stop_codon	19652..19654(-),19826..19828(-)		P61708	alanine--tRNA ligase	91.5	10.8	63.1
MGA_61	LOCUS_0610	sequence002:27025..27636(-)	internal_stop_codon	27772..27774(-),26833..26835(-),26821..26823(-),27703..27705(-),26839..26841(-),26743..26745(-),27025..27027(-),27676..27678(-),27721..27723(-)		H7C793	DNA gyrase subunit A	100.0	24.1	53.7
MGA_62	LOCUS_0620	sequence002:27772..28110(-)	internal_stop_codon	28219..28221(-),27772..27774(-),28231..28233(-),27703..27705(-),28276..28278(-),27676..27678(-),28123..28125(-),27721..27723(-),28114..28116(-)		Q03470	DNA gyrase subunit A	100.0	12.6	64.3
MGA_70	LOCUS_0700	sequence003:5570..5839(+)	internal_stop_codon	5990..5992(+),6035..6037(+),5567..5569(+),5837..5839(+),5954..5956(+),5894..5896(+)		Q8DWW1	DNA mismatch repair protein MutS	97.8	10.1	62.1
MGA_73	LOCUS_0730	sequence003:10424..10561(+)	internal_stop_codon	10739..10741(+),10340..10342(+),10358..10360(+),10613..10615(+),10721..10723(+),10607..10609(+),10559..10561(+),10391..10393(+),10751..10753(+),10799..10801(+),10316..10318(+),10268..10270(+)		WP_011202911.1	pyruvate, phosphate dikinase	100.0	5.0	66.7
MGA_74	LOCUS_0740	sequence003:11231..11527(+)	internal_stop_codon	11759..11761(+),11546..11548(+),11210..11212(+),11015..11017(+),11816..11818(+),11525..11527(+),11204..11206(+),11798..11800(+)		WP_010971160.1	pyruvate, phosphate dikinase	100.0	10.8	49.0
MGA_75	LOCUS_0750	sequence003:11573..11761(+)	internal_stop_codon	11759..11761(+),11867..11869(+),11546..11548(+),11918..11920(+),11816..11818(+),12035..12037(+),11525..11527(+),11798..11800(+),11837..11839(+),11984..11986(+)		WP_012707142.1	pyruvate, phosphate dikinase	80.6	5.6	56.0
MGA_78	LOCUS_0780	sequence003:14304..14600(+)	internal_stop_codon	14817..14819(+),14673..14675(+),14820..14822(+),14841..14843(+),14598..14600(+),14745..14747(+)		WP_010964962.1	phosphoribosylformylglycinamidine synthase	71.4	5.6	52.9
MGA_85	LOCUS_0850	sequence004:695..1015(+)	frameshift,internal_stop_codon	1188..1190(+),1053..1055(+),1200..1202(+)	1012,1052	F9UM19	ribonuclease R	95.3	12.5	57.4
MGA_87	LOCUS_0870	sequence004:1235..1813(+)	internal_stop_codon	1199..1201(+),1811..1813(+),1052..1054(+),1823..1825(+),1187..1189(+),1013..1015(+),1049..1051(+),1928..1930(+),1910..1912(+),1031..1033(+)		Q185A2	ribonuclease R	98.4	26.9	39.9
MGA_90	LOCUS_0900	sequence004:5670..6347(+)	internal_stop_codon	6492..6494(+),6408..6410(+),6345..6347(+),5652..5654(+)		A9WJX4	threonine--tRNA ligase	98.2	37.7	49.6
MGA_96	LOCUS_0960	sequence004:16365..16751(+)	internal_stop_codon	16299..16301(+),16806..16808(+),16236..16238(+),16266..16268(+),16749..16751(+),16254..16256(+),16761..16763(+)		Q8RGA3	tryptophan--tRNA ligase	94.5	37.2	43.8
MGA_97	LOCUS_0970	sequence004:16845..17171(+)	internal_stop_codon	16749..16751(+),16806..16808(+),16761..16763(+)		Q8RGA3	tryptophan--tRNA ligase	100.0	32.9	48.1
MGA_98	LOCUS_0980	sequence004:17526..17711(+)	internal_stop_codon	17709..17711(+),17904..17906(+),17880..17882(+),17715..17717(+),17754..17756(+),17889..17891(+),17967..17969(+),17499..17501(+),17901..17903(+)		A0A0H3MYU3	aconitate hydratase	98.4	6.7	63.3
MGA_99	LOCUS_0990	sequence004:18759..18944(+)	internal_stop_codon	18693..18695(+),18942..18944(+),18732..18734(+),18552..18554(+),18708..18710(+),19218..19220(+),18666..18668(+),18558..18560(+),18588..18590(+)		WP_000729744.1	aconitate hydratase AcnA	98.4	6.7	56.7
MGA_100	LOCUS_1000	sequence004:19008..19220(+)	internal_stop_codon	19254..19256(+),18942..18944(+),19422..19424(+),18732..18734(+),19344..19346(+),19218..19220(+)		WP_052846424.1	aconitate hydratase 1	100.0	8.1	38.6
MGA_104	LOCUS_1040	sequence005:1305..1703(-)	internal_stop_codon	1797..1799(-),1266..1268(-),1305..1307(-),1218..1220(-),1077..1079(-),1296..1298(-),1140..1142(-),1734..1736(-)		Q2RLX5	protein translocase subunit SecA	100.0	14.7	66.7
MGA_105	LOCUS_1050	sequence005:1797..2165(-)	internal_stop_codon	1797..1799(-),2271..2273(-),2421..2423(-),2415..2417(-),1734..1736(-)		Q8F4S9	protein translocase subunit SecA	98.4	13.2	45.8
MGA_106	LOCUS_1060	sequence005:2466..2813(-)	internal_stop_codon	2466..2468(-),2415..2417(-),2421..2423(-),2271..2273(-)		Q8KD18	protein translocase subunit SecA	97.4	13.9	28.5
MGA_110	LOCUS_1100	sequence005:6544..7590(+)	internal_stop_codon	7783..7785(+),7588..7590(+),7654..7656(+),7690..7692(+),7795..7797(+),7726..7728(+)		O66503	ribonucleoside-diphosphate reductase subunit alpha	67.2	29.8	37.3
MGA_111	LOCUS_1110	sequence005:8341..8478(+)	internal_stop_codon	8491..8493(+),8476..8478(+),8194..8196(+)		P55982	ribonucleoside-diphosphate reductase subunit alpha	100.0	5.7	48.9
MGA_112	LOCUS_1120	sequence005:8806..9156(+)	internal_stop_codon	8674..8676(+),8755..8757(+)		A5I5Q0	ribonucleoside-diphosphate reductase	98.3	14.8	45.6
MGA_113	LOCUS_1130	sequence005:9211..9369(+)	internal_stop_codon	9403..9405(+),9397..9399(+),9367..9369(+)		Q8RH17	ribonucleoside-diphosphate reductase subunit beta	80.8	12.1	57.1
MGA_114	LOCUS_1140	sequence005:9835..10107(+)	internal_stop_codon	10105..10107(+),10177..10179(+)		Q8RH17	ribonucleoside-diphosphate reductase subunit beta	98.9	25.6	49.4
MGA_119	LOCUS_1190	sequence005:14992..15204(+)	internal_stop_codon	14965..14967(+),14971..14973(+),14923..14925(+),14902..14904(+),15202..15204(+),14944..14946(+),15391..15393(+),14947..14949(+),15433..15435(+),15277..15279(+),14950..14952(+)		Q74EF3	GTPase HflX	98.6	12.4	52.2
MGA_126	LOCUS_1250	sequence006:2191..2679(-)	internal_stop_codon	2191..2193(-)		Q9F314	trigger factor	79.0	27.4	26.9
MGA_135	LOCUS_1340	sequence006:12256..12408(+)	internal_stop_codon	12103..12105(+),12247..12249(+),12406..12408(+),12457..12459(+),12022..12024(+)		B1MGA0	30S ribosomal protein S4	98.0	24.4	65.3
MGA_139	LOCUS_1380	sequence006:14936..15187(+)	internal_stop_codon	15185..15187(+),15230..15232(+),15254..15256(+),15317..15319(+)		Q6F0J2	30S ribosomal protein S12	98.8	58.4	65.9
MGA_140	LOCUS_1390	sequence006:15427..15633(+)	internal_stop_codon	15727..15729(+),15631..15633(+)		Q2RFP3	30S ribosomal protein S7	82.4	35.9	53.6
MGA_143	LOCUS_1420	sequence006:16721..16942(+)	internal_stop_codon	17048..17050(+),16946..16948(+),16565..16567(+),17165..17167(+),16940..16942(+),16706..16708(+),17039..17041(+),17144..17146(+),17021..17023(+),17156..17158(+),17159..17161(+),16487..16489(+),17015..17017(+),16955..16957(+)		O66949	phosphoribosylamine--glycine ligase	97.3	15.6	39.4
MGA_148	LOCUS_1470	sequence007:2146..2451(+)	internal_stop_codon	2449..2451(+),2542..2544(+),2635..2637(+),2614..2616(+)		Q9Z6Y2	primosomal protein N'	92.1	12.6	30.9
MGA_154	LOCUS_1530	sequence007:6798..6965(-)	internal_stop_codon	7059..7061(-),7113..7115(-),6996..6998(-)		WP_011057738.1	ABC transporter ATP-binding protein	96.4	16.6	64.2
MGA_155	LOCUS_1540	sequence007:7715..8095(+)	internal_stop_codon	7571..7573(+),7682..7684(+)		P56398	ribosome-recycling factor	100.0	68.1	50.0
MGA_156	LOCUS_1550	sequence007:8219..8998(+)	partial			WP_010921270.1	arylesterase	97.7	59.1	26.6
MGA_158	LOCUS_1570	sequence007:11327..11554(-)	internal_stop_codon	11630..11632(-),11780..11782(-),11567..11569(-),11327..11329(-)		WP_008763440.1	LemA protein	96.0	38.7	59.7
MGA_170	LOCUS_1680	sequence008:2435..2620(-)	internal_stop_codon	2657..2659(-),2435..2437(-),2651..2653(-)		Q87QP1	serine--tRNA ligase	100.0	14.3	46.8
MGA_171	LOCUS_1690	sequence008:2657..3220(-)	internal_stop_codon	3227..3229(-),2657..2659(-),2435..2437(-),3299..3301(-),2651..2653(-)		WP_010868451.1	serine--tRNA ligase	100.0	37.6	41.0
MGA_182	LOCUS_1800	sequence008:12714..13265(-)	internal_stop_codon	13527..13529(-),13530..13532(-),13293..13295(-),13305..13307(-),13509..13511(-)		Q8ZC49	tRNA sulfurtransferase	98.9	37.5	42.3
MGA_183	LOCUS_1810	sequence008:13923..14252(-)	internal_stop_codon	13923..13925(-),13653..13655(-),13656..13658(-)		Q4ZLX9	tRNA sulfurtransferase	78.0	17.8	44.2
MGA_189	LOCUS_1870	sequence009:475..735(-)	internal_stop_codon	403..405(-),745..747(-),475..477(-),883..885(-),823..825(-),340..342(-),328..330(-)		F0KG75	putative malate:quinone oxidoreductase	100.0	15.4	40.7
MGA_205	LOCUS_2020	sequence010:763..945(+)	internal_stop_codon	664..666(+),943..945(+),1192..1194(+),973..975(+),730..732(+)		Q72CD8	proline--tRNA ligase	100.0	10.8	45.2
MGA_208	LOCUS_2050	sequence010:3999..4190(+)	partial			Q72CM9	ribosomal RNA large subunit methyltransferase H	88.9	35.3	51.8
MGA_209	LOCUS_2060	sequence010:4242..4526(+)	internal_stop_codon	4560..4562(+),4524..4526(+)		WP_011861377.1	RNA polymerase sigma factor	91.5	49.1	36.8
MGA_214	LOCUS_2110	sequence010:12956..13411(+)	internal_stop_codon	13646..13648(+),12950..12952(+),13472..13474(+),13625..13627(+),12761..12763(+),13409..13411(+),12800..12802(+),13517..13519(+)		Q9PJ21	ATP synthase subunit alpha	100.0	30.1	74.8
MGA_215	LOCUS_2120	sequence010:13793..14050(+)	internal_stop_codon	13784..13786(+),13517..13519(+),13625..13627(+),13646..13648(+)		P55987	ATP synthase subunit alpha	100.0	16.3	40.7
MGA_216	LOCUS_2130	sequence010:14192..14404(+)	internal_stop_codon	14402..14404(+)		P56082	ATP synthase gamma chain	75.7	17.6	49.1
MGA_217	LOCUS_2140	sequence010:14645..15097(+)	internal_stop_codon	14504..14506(+),14402..14404(+),14615..14617(+),14531..14533(+),14591..14593(+)		Q927W3	ATP synthase gamma chain	96.0	45.2	35.4
MGA_219	LOCUS_2160	sequence010:16322..16489(+)	internal_stop_codon	16091..16093(+),16511..16513(+),16517..16519(+),16601..16603(+),16595..16597(+),16490..16492(+),16652..16654(+),16487..16489(+),16307..16309(+),16619..16621(+)		Q180W5	ATP synthase subunit beta	100.0	11.9	65.5
MGA_220	LOCUS_2170	sequence010:16673..16843(+)	internal_stop_codon	16511..16513(+),16517..16519(+),16601..16603(+),16595..16597(+),16490..16492(+),16652..16654(+),16862..16864(+),16487..16489(+),16619..16621(+),16841..16843(+)		Q814W2	ATP synthase subunit beta	100.0	12.0	82.1
MGA_225	LOCUS_2220	sequence011:4951..5301(+)	internal_stop_codon	5308..5310(+),5374..5376(+),5299..5301(+),5449..5451(+)		Q8Y4A8	peptide chain release factor 1	89.7	29.1	49.0
MGA_226	LOCUS_2230	sequence011:5563..5724(+)	internal_stop_codon	5722..5724(+)		WP_000168249.1	peptidyl-tRNA hydrolase	83.0	28.4	54.5
MGA_229	LOCUS_2260	sequence011:7528..8067(+)	internal_stop_codon	8116..8118(+),8227..8229(+),7465..7467(+),8074..8076(+),8065..8067(+)		Q83F40	2-amino-3-ketobutyrate coenzyme A ligase	98.9	45.7	63.0
MGA_230	LOCUS_2270	sequence011:8410..8616(+)	internal_stop_codon	8368..8370(+),8227..8229(+)		A0A0H3CDP9	2-amino-3-ketobutyrate coenzyme A ligase	100.0	16.8	52.9
MGA_232	LOCUS_2290	sequence011:9896..10177(+)	internal_stop_codon	9818..9820(+),9845..9847(+),9692..9694(+)		WP_011109297.1	DNA-binding protein	94.6	29.6	35.2
MGA_233	LOCUS_2300	sequence011:10959..11132(+)	internal_stop_codon	11130..11132(+),11148..11150(+),11223..11225(+),11229..11231(+),11301..11303(+)		Q5SLI8	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	100.0	14.0	56.1
MGA_236	LOCUS_2330	sequence011:14405..14677(+)	internal_stop_codon	14357..14359(+),14726..14728(+),14801..14803(+),14366..14368(+),14246..14248(+),14675..14677(+),14120..14122(+),14864..14866(+),14333..14335(+),14318..14320(+),14207..14209(+),14846..14848(+)		Q8CQK4	DNA gyrase subunit B	100.0	14.3	45.7
MGA_237	LOCUS_2340	sequence012:211..366(+)	internal_stop_codon	364..366(+),199..201(+),376..378(+),136..138(+),169..171(+)		D1B5W5	50S ribosomal protein L14	100.0	41.8	64.7
MGA_239	LOCUS_2360	sequence012:1718..1984(+)	internal_stop_codon	1982..1984(+),2087..2089(+),2045..2047(+),2018..2020(+),2057..2059(+)		A9WH80	30S ribosomal protein S8	95.5	63.9	42.9
MGA_240	LOCUS_2370	sequence012:2396..2533(+)	internal_stop_codon	2261..2263(+),2531..2533(+),2603..2605(+),2582..2584(+),2660..2662(+)		Q3XYX4	50S ribosomal protein L6	100.0	25.3	60.0
MGA_244	LOCUS_2410	sequence012:5078..5287(+)	internal_stop_codon	5285..5287(+),5051..5053(+),5336..5338(+),5324..5326(+)		B8E1F2	protein translocase subunit SecY	85.5	14.1	55.9
MGA_246	LOCUS_2430	sequence012:6080..6580(+)	internal_stop_codon	6671..6673(+),6578..6580(+)		F0KL50	Holliday junction ATP-dependent DNA helicase RuvB	94.0	46.1	53.8
MGA_249	LOCUS_2460	sequence012:7921..8139(+)	internal_stop_codon	8137..8139(+),8236..8238(+),7852..7854(+),8245..8247(+),7918..7920(+),7837..7839(+),7840..7842(+),8233..8235(+),7885..7887(+)		WP_064496746.1	CTP synthase	100.0	13.4	70.8
MGA_250	LOCUS_2470	sequence012:8269..8604(+)	internal_stop_codon	8137..8139(+),8686..8688(+),8602..8604(+),8236..8238(+),8245..8247(+),8854..8856(+),8233..8235(+),8695..8697(+)		A5HY28	CTP synthase	96.4	20.1	46.7
MGA_251	LOCUS_2480	sequence012:9157..9441(+)	internal_stop_codon	8914..8916(+),9139..9141(+),8974..8976(+),8905..8907(+),9121..9123(+),9124..9126(+),8986..8988(+)		Q8G5X7	CTP synthase	98.9	17.2	57.9
MGA_253	LOCUS_2500	sequence012:10418..10606(+)	internal_stop_codon	10604..10606(+),10688..10690(+)		A0A0H3CKP1	superoxide dismutase	98.4	31.1	72.1
MGA_254	LOCUS_2510	sequence012:10703..10999(+)	internal_stop_codon	10604..10606(+),10688..10690(+)		Q63WL1	superoxide dismutase	95.9	49.0	59.6
MGA_256	LOCUS_2530	sequence012:11897..12103(-)	internal_stop_codon	12182..12184(-),11897..11899(-),11792..11794(-)		Q8EZY7	leucine--tRNA ligase	98.5	7.6	53.7
MGA_257	LOCUS_2540	sequence012:12182..12319(-)	internal_stop_codon	12560..12562(-),12410..12412(-),12182..12184(-),12491..12493(-)		O51267	leucine--tRNA ligase	100.0	5.4	57.8
MGA_260	LOCUS_2570	sequence012:13574..13915(-)	internal_stop_codon	13994..13996(-),13334..13336(-),13427..13429(-),14093..14095(-),14189..14191(-),14177..14179(-),13364..13366(-),13574..13576(-)		Q73K81	leucine--tRNA ligase	100.0	13.5	59.8
MGA_261	LOCUS_2580	sequence012:14189..14335(-)	internal_stop_codon	14177..14179(-),14093..14095(-),13994..13996(-),14189..14191(-)		Q9CHB6	leucine--tRNA ligase	97.9	5.7	76.6
MGA_266	LOCUS_2630	sequence013:5341..5502(+)	internal_stop_codon	5086..5088(+),5131..5133(+),5500..5502(+),5326..5328(+),5308..5310(+),5275..5277(+),5248..5250(+)		WP_011393182.1	(p)ppGpp synthetase	100.0	7.3	69.8
MGA_278	LOCUS_2750	sequence014:1819..2043(-)	internal_stop_codon	1717..1719(-),1675..1677(-),2047..2049(-),1666..1668(-),1819..1821(-),2254..2256(-),1636..1638(-),1708..1710(-),2110..2112(-),1747..1749(-),2326..2328(-),2317..2319(-)		WP_012546881.1	type IV-A pilus assembly ATPase PilB	98.6	12.9	63.5
MGA_286	LOCUS_2830	sequence014:7406..7648(-)	frameshift,internal_stop_codon	7226..7228(-),7388..7390(-),7406..7408(-)	7156	A5I4J9	DNA polymerase III PolC-type	97.5	5.3	42.3
MGA_290	LOCUS_2870	sequence014:10957..11151(-)	internal_stop_codon	10957..10959(-),11326..11328(-),10936..10938(-),10762..10764(-),10693..10695(-),11194..11196(-),11395..11397(-),10858..10860(-),10909..10911(-),11227..11229(-),11374..11376(-)		O34863	UvrABC system protein A	100.0	6.7	68.8
MGA_291	LOCUS_2880	sequence014:13057..13206(-)	internal_stop_codon	13057..13059(-),12937..12939(-),13210..13212(-),13306..13308(-),12868..12870(-),13027..13029(-),12889..12891(-),13384..13386(-)		Q6MS39	UvrABC system protein A	98.0	5.1	72.9
MGA_293	LOCUS_2890	sequence015:941..1087(-)	internal_stop_codon	1211..1213(-),1184..1186(-),1091..1093(-),815..817(-),1295..1297(-),1280..1282(-),1178..1180(-),1163..1165(-),1124..1126(-),941..943(-)		Q2S0N1	acetolactate synthase	83.3	6.7	67.5
MGA_297	LOCUS_2930	sequence015:8595..8780(-)	internal_stop_codon	8595..8597(-),8553..8555(-),8991..8993(-),8385..8387(-),8331..8333(-),8859..8861(-),8781..8783(-),8466..8468(-),8847..8849(-),9000..9002(-),8445..8447(-)		Q185R8	1-deoxy-D-xylulose 5-phosphate reductoisomerase	100.0	15.9	62.3
MGA_300	LOCUS_2960	sequence015:10428..10628(+)	internal_stop_codon	10704..10706(+),10779..10781(+),10299..10301(+),10626..10628(+),10680..10682(+),10791..10793(+),10671..10673(+),10665..10667(+)		A5I7P7	tRNA-dihydrouridine synthase	86.4	17.6	47.4
MGA_306	LOCUS_3010	sequence016:191..331(+)	internal_stop_codon	98..100(+),389..391(+),374..376(+),416..418(+),329..331(+),404..406(+)		Q5SHT8	S-adenosylmethionine synthase	100.0	11.6	50.0
MGA_307	LOCUS_3020	sequence016:464..652(+)	internal_stop_codon	650..652(+),389..391(+),911..913(+),755..757(+),374..376(+),416..418(+),404..406(+),683..685(+),824..826(+),764..766(+),329..331(+)		P54419	S-adenosylmethionine synthase	98.4	15.2	68.9
MGA_321	LOCUS_3160	sequence017:1346..1600(+)	partial			WP_005788413.1	RNA-binding protein	92.9	63.9	51.3
MGA_332	LOCUS_3270	sequence017:11177..11383(-)	internal_stop_codon	11402..11404(-)		C3M8I6	UPF0061 protein	100.0	13.6	57.4
MGA_333	LOCUS_3280	sequence017:11402..11698(-)	internal_stop_codon	11402..11404(-),11804..11806(-),11747..11749(-),11885..11887(-)		Q92RB2	UPF0061 protein R00982	96.9	19.6	36.5
MGA_340	LOCUS_3350	sequence018:3191..3412(+)	internal_stop_codon	3458..3460(+),3410..3412(+),3446..3448(+)		O66536	putative HIT-like protein	97.3	58.7	49.3
MGA_343	LOCUS_3380	sequence018:7906..8106(+)	internal_stop_codon	7846..7848(+),7672..7674(+),8161..8163(+),7744..7746(+),8104..8106(+),7876..7878(+),8206..8208(+),8302..8304(+),8260..8262(+)		O66766	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	100.0	13.8	63.6
MGA_345	LOCUS_3400	sequence019:632..811(-)	internal_stop_codon	632..634(-),872..874(-),818..820(-),1082..1084(-),1013..1015(-)		WP_002263864.1	S1 RNA-binding protein	100.0	9.2	50.8
MGA_349	LOCUS_3440	sequence019:6334..6561(-)	internal_stop_codon	6232..6234(-),6223..6225(-),6586..6588(-),6088..6090(-),6334..6336(-),6322..6324(-)		Q7NFH7	ribulose-phosphate 3-epimerase	100.0	31.3	50.7
MGA_351	LOCUS_3460	sequence019:7060..7368(-)	partial			A0KJT8	5'-deoxynucleotidase	83.3	43.4	34.1
MGA_356	LOCUS_3510	sequence020:1823..2071(-)	internal_stop_codon	2072..2074(-),1646..1648(-),1721..1723(-),1652..1654(-),1823..1825(-),2285..2287(-)		Q5NHT8	chaperone protein HtpG	98.8	12.4	53.1
MGA_358	LOCUS_3530	sequence020:2723..2887(-)	internal_stop_codon	2612..2614(-),2645..2647(-),2723..2725(-),2522..2524(-)		Q8RGH4	chaperone protein HtpG	90.7	8.1	67.3
MGA_360	LOCUS_3550	sequence020:4264..4503(-)	internal_stop_codon	4264..4266(-)		Q89MZ0	GTPase Der	77.2	12.8	50.8
MGA_363	LOCUS_3580	sequence020:6426..6593(-)	frameshift,internal_stop_codon	6593..6595(-),6821..6823(-),6605..6607(-),6623..6625(-)	6790,6830	A9WGJ7	aspartate--tRNA(Asp/Asn) ligase	90.9	8.5	60.0
MGA_364	LOCUS_3590	sequence020:6828..6983(-)	internal_stop_codon	6624..6626(-),6594..6596(-),7014..7016(-),6828..6830(-),7134..7136(-),6606..6608(-),6825..6827(-)		Q9ZE17	aspartate--tRNA(Asp/Asn) ligase	98.0	8.3	62.0
MGA_365	LOCUS_3600	sequence020:7425..7949(-)	internal_stop_codon	7989..7991(-),7425..7427(-)		Q8KCT7	aspartate--tRNA(Asp/Asn) ligase	100.0	28.7	54.6
MGA_366	LOCUS_3610	sequence020:7989..8213(-)	internal_stop_codon	7989..7991(-)		Q2S158	aspartate--tRNA(Asp/Asn) ligase	97.3	11.4	59.7
MGA_376	LOCUS_3700	sequence021:6574..6822(+)	internal_stop_codon	6532..6534(+),6964..6966(+),6886..6888(+),7018..7020(+),6820..6822(+),7093..7095(+),6973..6975(+),6541..6543(+)		Q8EXN4	protease HtpX	100.0	26.8	48.8
MGA_379	LOCUS_3730	sequence021:10296..10775(+)	internal_stop_codon	10254..10256(+),10221..10223(+),11052..11054(+),10773..10775(+)		Q97EB8	glycine--tRNA ligase	100.0	33.5	58.5
MGA_380	LOCUS_3740	sequence021:10854..11054(+)	internal_stop_codon	11193..11195(+),10773..10775(+),11238..11240(+),11289..11291(+),11187..11189(+),11052..11054(+)		Q73RR5	glycine--tRNA ligase	100.0	14.4	40.9
MGA_382	LOCUS_3760	sequence022:1942..2298(+)	frameshift,internal_stop_codon	1747..1749(+),1801..1803(+),2467..2469(+),1867..1869(+),2296..2298(+),1705..1707(+)	2556	WP_011948368.1	ATP-dependent RNA helicase RhlE	100.0	27.8	59.3
MGA_383	LOCUS_3770	sequence022:2799..2996(+)	internal_stop_codon	2994..2996(+),3039..3041(+),3006..3008(+)		Q87Y22	DNA polymerase IV	70.8	14.4	47.1
MGA_397	LOCUS_3910	sequence023:9207..9458(-)	internal_stop_codon	9696..9698(-),9207..9209(-),9603..9605(-),9063..9065(-),9570..9572(-),9468..9470(-),9144..9146(-)		WP_012546848.1	deoxyribodipyrimidine photo-lyase	83.1	15.8	56.5
MGA_400	LOCUS_3940	sequence024:2113..2496(-)	internal_stop_codon	2728..2730(-),1834..1836(-),2113..2115(-),2509..2511(-),2089..2091(-)		Q8UIS9	nicotinate phosphoribosyltransferase	93.7	27.2	39.2
MGA_408	LOCUS_4020	sequence024:9578..9886(-)	internal_stop_codon	10067..10069(-),10064..10066(-),9578..9580(-),10097..10099(-),9962..9964(-)		WP_011110277.1	agmatine deiminase	100.0	30.0	50.0
MGA_409	LOCUS_4030	sequence024:10097..10414(-)	internal_stop_codon	10067..10069(-),10097..10099(-),10064..10066(-),9962..9964(-)		WP_011110277.1	agmatine deiminase	99.0	30.9	51.9
MGA_410	LOCUS_4040	sequence024:10978..11274(-)	partial			WP_005811376.1	cell division protein FtsZ	99.0	22.9	41.2
MGA_413	LOCUS_4070	sequence025:2542..2895(+)	internal_stop_codon	2893..2895(+)		Q8KG17	50S ribosomal protein L10	89.7	60.7	33.3
MGA_420	LOCUS_4140	sequence025:8542..8751(-)	internal_stop_codon	8542..8544(-),8482..8484(-),8359..8361(-),8404..8406(-),8317..8319(-),8470..8472(-)		WP_010963972.1	DNA-binding response regulator	100.0	31.2	53.6
MGA_432	LOCUS_4260	sequence027:2427..2618(-)	internal_stop_codon	2391..2393(-),2619..2621(-),2628..2630(-),2631..2633(-),2700..2702(-),2427..2429(-),2865..2867(-),2685..2687(-),2364..2366(-)		A0A0H3EP59	ATP-dependent zinc metalloprotease FtsH	100.0	9.8	54.0
MGA_433	LOCUS_4270	sequence027:2700..2858(-)	internal_stop_codon	2886..2888(-),3150..3152(-),2619..2621(-),2628..2630(-),2631..2633(-),2700..2702(-),2427..2429(-),2865..2867(-),2685..2687(-)		Q181G0	ATP-dependent zinc metalloprotease FtsH	98.1	7.7	47.1
MGA_434	LOCUS_4280	sequence027:2886..3107(-)	internal_stop_codon	3168..3170(-),2886..2888(-),3150..3152(-),3264..3266(-),2700..2702(-),2865..2867(-),2685..2687(-),3162..3164(-),3270..3272(-)		Q8R6D4	ATP-dependent zinc metalloprotease FtsH	98.6	10.1	56.9
MGA_435	LOCUS_4290	sequence027:3408..3572(-)	internal_stop_codon	3168..3170(-),3150..3152(-),3576..3578(-),3264..3266(-),3408..3410(-),3585..3587(-),3162..3164(-),3600..3602(-),3270..3272(-)		Q81J82	ATP-dependent zinc metalloprotease FtsH	96.3	8.2	51.9
MGA_437	LOCUS_4310	sequence027:5273..5521(+)	internal_stop_codon	5519..5521(+),5582..5584(+),5600..5602(+)		Q5NHY1	dihydrofolate reductase	96.3	41.6	51.9
MGA_439	LOCUS_4330	sequence027:7777..8253(-)	internal_stop_codon	8272..8274(-)		A0A0H3EC82	DNA helicase	83.5	15.1	43.3
MGA_443	LOCUS_4370	sequence028:4650..4811(-)	internal_stop_codon	4500..4502(-),5034..5036(-),4827..4829(-),4944..4946(-),4572..4574(-),4902..4904(-),4527..4529(-),4650..4652(-),4416..4418(-),4845..4847(-),4611..4613(-)		D3H7B2	60 kDa chaperonin	100.0	9.6	62.3
MGA_450	LOCUS_4440	sequence029:367..555(-)	internal_stop_codon	97..99(-),85..87(-),367..369(-)		F0KHB3	inosine-5'-monophosphate dehydrogenase	91.9	11.7	57.9
MGA_461	LOCUS_4540	sequence030:1193..1528(+)	internal_stop_codon	980..982(+),1526..1528(+),1088..1090(+),953..955(+)		WP_015776105.1	glycosyl transferase	92.8	42.7	43.7
MGA_471	LOCUS_4640	sequence031:5107..5379(+)	internal_stop_codon	5377..5379(+),4960..4962(+),5017..5019(+),5095..5097(+)		WP_012259042.1	NUDIX hydrolase	97.8	36.8	46.1
MGA_478	LOCUS_4710	sequence032:2172..2444(+)	internal_stop_codon	2442..2444(+),2610..2612(+)		O51773	isoleucine--tRNA ligase	61.1	5.3	65.5
MGA_479	LOCUS_4720	sequence032:2688..3047(+)	internal_stop_codon	3276..3278(+),3045..3047(+),2610..2612(+),3303..3305(+),3183..3185(+),3249..3251(+),3198..3200(+),2442..2444(+),3132..3134(+)		Q73JB2	isoleucine--tRNA ligase	100.0	10.5	55.8
MGA_480	LOCUS_4730	sequence032:3633..3842(+)	internal_stop_codon	3426..3428(+),3840..3842(+),4080..4082(+),3360..3362(+),3381..3383(+),3861..3863(+)		Q73JB2	isoleucine--tRNA ligase	94.2	5.9	60.0
MGA_482	LOCUS_4750	sequence032:5118..5297(+)	internal_stop_codon	5295..5297(+),5067..5069(+),5340..5342(+)		O51773	isoleucine--tRNA ligase	98.3	5.6	62.1
MGA_486	LOCUS_4790	sequence032:7638..7826(-)	internal_stop_codon	7638..7640(-),7974..7976(-),7839..7841(-),7992..7994(-)		Q833Z0	amidophosphoribosyltransferase	93.5	11.9	60.3
MGA_493	LOCUS_4850	sequence033:4337..4507(-)	internal_stop_codon	4685..4687(-),4553..4555(-),4673..4675(-),4604..4606(-),4586..4588(-),4337..4339(-)		E3D9C6	argininosuccinate synthase	96.4	13.4	44.4
MGA_494	LOCUS_4860	sequence033:4685..4903(-)	internal_stop_codon	5096..5098(-),5021..5023(-),4586..4588(-),4685..4687(-),5000..5002(-),4673..4675(-),4985..4987(-),4604..4606(-),4553..4555(-)		D1B9N3	argininosuccinate synthase	58.3	10.2	57.1
MGA_500	LOCUS_4920	sequence034:140..409(-)	internal_stop_codon	410..412(-),548..550(-)		WP_011250801.1	peptidyl-prolyl cis-trans isomerase	100.0	54.1	40.4
MGA_501	LOCUS_4930	sequence034:548..946(-)	internal_stop_codon	968..970(-)		Q8F376	peptidyl-prolyl cis-trans isomerase	64.4	55.9	60.0
MGA_502	LOCUS_4940	sequence034:968..1264(-)	internal_stop_codon	968..970(-)		WP_002263035.1	hydrolase	77.6	14.2	44.7
MGA_504	LOCUS_4960	sequence034:2709..2900(-)	internal_stop_codon	3063..3065(-),2664..2666(-),2631..2633(-),2937..2939(-),2709..2711(-),3096..3098(-)		P37474	transcription-repair-coupling factor	96.8	5.2	41.0
MGA_508	LOCUS_5000	sequence034:5841..6308(+)	frameshift,internal_stop_codon	6307..6309(+),5809..5811(+),6358..6360(+),5634..5636(+),6400..6402(+),6382..6384(+),5818..5820(+),5670..5672(+)	5835,5756	P19688	3-phosphoshikimate 1-carboxyvinyltransferase	89.0	30.8	40.0
MGA_510	LOCUS_5020	sequence034:8553..8711(+)	internal_stop_codon	8481..8483(+),8709..8711(+),8397..8399(+),8820..8822(+),8799..8801(+),8502..8504(+),8340..8342(+)		O51604	GTPase Era	94.2	16.9	59.2
MGA_511	LOCUS_5030	sequence035:973..1224(+)	internal_stop_codon	1222..1224(+),847..849(+),970..972(+)		Q97I09	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	98.8	13.1	42.9
MGA_512	LOCUS_5040	sequence035:1536..1832(+)	internal_stop_codon	1983..1985(+),1830..1832(+)		A6GWU2	30S ribosomal protein S2	84.7	31.2	45.8
MGA_513	LOCUS_5050	sequence035:1995..2429(+)	internal_stop_codon	1983..1985(+),1830..1832(+)		Q7UKH4	30S ribosomal protein S2	47.2	26.2	35.3
MGA_515	LOCUS_5070	sequence035:2858..3172(+)	internal_stop_codon	2849..2851(+),3170..3172(+)		P80700	elongation factor Ts	99.0	35.5	51.0
MGA_516	LOCUS_5080	sequence035:3311..3592(+)	internal_stop_codon	3170..3172(+)		P43894	elongation factor Ts	100.0	32.2	42.1
MGA_527	LOCUS_5190	sequence036:4530..4814(+)	internal_stop_codon	4878..4880(+),4527..4529(+),4812..4814(+),4851..4853(+)		Q9Z7N8	DNA polymerase III subunit alpha	69.1	5.9	46.6
MGA_529	LOCUS_5210	sequence036:5838..5981(+)	internal_stop_codon	6168..6170(+),5979..5981(+),5766..5768(+),5991..5993(+),5730..5732(+),6150..6152(+),5718..5720(+)		Q2RHB7	DNA-directed DNA polymerase	100.0	4.1	68.1
MGA_531	LOCUS_5230	sequence036:6480..6659(+)	internal_stop_codon	6318..6320(+),6720..6722(+),6294..6296(+),6879..6881(+),6453..6455(+),6816..6818(+),6657..6659(+)		Q8A5K9	DNA-directed DNA polymerase	98.3	4.6	60.3
MGA_532	LOCUS_5240	sequence036:6975..7136(+)	internal_stop_codon	7275..7277(+),6720..6722(+),7293..7295(+),6879..6881(+),7134..7136(+),6816..6818(+)		Q5ZWX2	DNA-directed DNA polymerase	100.0	4.6	49.1
MGA_533	LOCUS_5250	sequence036:7308..7634(+)	internal_stop_codon	7275..7277(+),7293..7295(+),7134..7136(+)		WP_005814652.1	DNA polymerase III subunit alpha	62.0	5.6	38.8
MGA_535	LOCUS_5270	sequence037:1399..1665(-)	internal_stop_codon	1858..1860(-),1738..1740(-),1696..1698(-),1864..1866(-),1741..1743(-)		WP_011106349.1	glutamate synthase	100.0	17.2	65.9
MGA_537	LOCUS_5290	sequence037:4901..5050(+)	internal_stop_codon	5261..5263(+),5180..5182(+),5048..5050(+),5189..5191(+)		A3CR14	DNA mismatch repair protein MutL	100.0	7.6	75.5
MGA_538	LOCUS_5300	sequence037:5624..5962(+)	internal_stop_codon	5603..5605(+)		Q187T7	DNA mismatch repair protein MutL	78.6	13.4	39.8
MGA_546	LOCUS_5380	sequence039:3838..4020(+)	internal_stop_codon	4018..4020(+),4039..4041(+),3775..3777(+),3757..3759(+)		YP_002347251.1	hypothetical protein	98.3	37.6	67.8
MGA_547	LOCUS_5390	sequence039:4935..5162(+)	internal_stop_codon	5160..5162(+)		WP_011089212.1	hydrolase glyoxylase	82.7	18.2	49.2
MGA_548	LOCUS_5400	sequence039:5193..5765(+)	internal_stop_codon	5160..5162(+)		WP_011089212.1	hydrolase glyoxylase	81.1	44.6	35.2
MGA_550	LOCUS_5420	sequence039:6928..7554(+)	partial			WP_011962861.1	peroxiredoxin	55.3	59.8	35.0
MGA_559	LOCUS_5510	sequence041:1053..1220(+)	internal_stop_codon	1260..1262(+),1293..1295(+),1239..1241(+),1005..1007(+),1470..1472(+),1218..1220(+),1482..1484(+)		Q8AAA8	carbamoyl-phosphate synthase (glutamine-hydrolyzing)	100.0	5.1	76.4
MGA_560	LOCUS_5520	sequence041:1302..1472(+)	internal_stop_codon	1260..1262(+),1293..1295(+),1671..1673(+),1239..1241(+),1470..1472(+),1218..1220(+),1482..1484(+)		B5YLE4	carbamoyl-phosphate synthase (glutamine-hydrolyzing)	94.6	4.8	47.2
MGA_561	LOCUS_5530	sequence041:1899..2147(+)	internal_stop_codon	1671..1673(+),1773..1775(+),2145..2147(+),2412..2414(+),2370..2372(+)		WP_010878769.1	carbamoyl phosphate synthase large subunit	100.0	7.6	59.8
MGA_567	LOCUS_5590	sequence042:191..487(-)	internal_stop_codon	713..715(-),533..535(-),614..616(-),524..526(-),722..724(-),503..505(-)		WP_005811376.1	cell division protein FtsZ	99.0	22.9	42.3
MGA_569	LOCUS_5610	sequence042:722..871(-)	internal_stop_codon	911..913(-),713..715(-),533..535(-),1091..1093(-),614..616(-),524..526(-),980..982(-),1016..1018(-),722..724(-),1115..1117(-),926..928(-),503..505(-)		A5I4W6	cell division protein FtsZ	87.8	11.7	60.5
MGA_570	LOCUS_5620	sequence042:2068..2310(-)	internal_stop_codon	2347..2349(-),2038..2040(-),1915..1917(-),2068..2070(-),1945..1947(-),2434..2436(-),2506..2508(-),1897..1899(-)		Q9RWN6	cell division protein FtsA	87.5	13.5	38.6
MGA_575	LOCUS_5670	sequence043:471..746(-)	internal_stop_codon	441..443(-),180..182(-),354..356(-),411..413(-),471..473(-)		Q87WC1	serine hydroxymethyltransferase 2	92.3	20.1	67.9
MGA_583	LOCUS_5750	sequence043:5959..6165(+)	internal_stop_codon	5686..5688(+),5905..5907(+),6247..6249(+),6397..6399(+),6268..6270(+),6163..6165(+),5824..5826(+)		Q5E7T8	putative cytosol aminopeptidase	100.0	13.5	52.9
MGA_595	LOCUS_5860	sequence045:3197..3319(-)	internal_stop_codon	3029..3031(-),3347..3349(-),2999..3001(-),3122..3124(-),3326..3328(-),3155..3157(-),3044..3046(-),3197..3199(-)		WP_005783471.1	K+-dependent Na+/Ca+ exchanger	92.5	11.6	70.3
MGA_597	LOCUS_5880	sequence045:3959..4156(-)	internal_stop_codon	3689..3691(-),4340..4342(-),4217..4219(-),3959..3961(-),4427..4429(-),4211..4213(-),4205..4207(-),3923..3925(-),4229..4231(-),4241..4243(-),4442..4444(-)		A0R2T0	ribosome-binding ATPase YchF	63.1	11.1	53.7
MGA_598	LOCUS_5890	sequence045:4884..5174(-)	partial			Q2S0Y1	valine--tRNA ligase	82.3	8.8	35.4
MGA_599	LOCUS_5900	sequence045:5418..5627(-)	internal_stop_codon	5850..5852(-),5409..5411(-),5418..5420(-),5385..5387(-),5754..5756(-)		Q180A1	valine--tRNA ligase	100.0	8.3	41.0
MGA_610	LOCUS_5990	sequence046:7080..7271(-)	internal_stop_codon	7272..7274(-),7080..7082(-)		P94266	30S ribosomal protein S10	98.4	60.2	62.9
MGA_620	LOCUS_6090	sequence048:2441..2668(-)	internal_stop_codon	2936..2938(-),2441..2443(-),2693..2695(-),2903..2905(-),2246..2248(-),2714..2716(-)		Q2RV18	ATP synthase subunit beta	100.0	15.8	84.0
MGA_621	LOCUS_6100	sequence048:2714..2884(-)	internal_stop_codon	3038..3040(-),3068..3070(-),2903..2905(-),2693..2695(-),2441..2443(-),2960..2962(-),2936..2938(-),3065..3067(-),2954..2956(-),3044..3046(-),2714..2716(-)		Q814W2	ATP synthase subunit beta	100.0	12.0	82.1
MGA_622	LOCUS_6110	sequence048:3068..3235(-)	internal_stop_codon	3254..3256(-),3038..3040(-),3068..3070(-),2903..2905(-),3248..3250(-),2960..2962(-),2936..2938(-),3065..3067(-),2954..2956(-),3044..3046(-),3464..3466(-)		Q180W5	ATP synthase subunit beta	100.0	11.9	65.5
MGA_623	LOCUS_6120	sequence048:3254..3379(-)	internal_stop_codon	3254..3256(-),3038..3040(-),3065..3067(-),3044..3046(-),3068..3070(-),3464..3466(-),3248..3250(-)		F0KJG9	ATP synthase subunit beta	97.6	8.6	75.0
MGA_624	LOCUS_6130	sequence048:4409..4861(-)	internal_stop_codon	4973..4975(-),5000..5002(-),5087..5089(-),4889..4891(-),4913..4915(-)		Q927W3	ATP synthase gamma chain	90.7	42.4	38.2
MGA_625	LOCUS_6140	sequence048:5328..5585(-)	internal_stop_codon	5859..5861(-),5730..5732(-),5592..5594(-),5751..5753(-)		Q9PJ21	ATP synthase subunit alpha	92.9	16.0	38.8
MGA_626	LOCUS_6150	sequence048:5967..6179(-)	internal_stop_codon	5859..5861(-),6426..6428(-),6261..6263(-),5730..5732(-),5967..5969(-),5751..5753(-)		Q7UFB7	ATP synthase subunit alpha 2	100.0	13.8	74.3
MGA_627	LOCUS_6160	sequence048:6261..6422(-)	internal_stop_codon	6426..6428(-),6261..6263(-),6576..6578(-),5967..5969(-),6615..6617(-)		A0A0H3MYX1	ATP synthase subunit alpha	100.0	10.6	92.5
MGA_632	LOCUS_6200	sequence050:751..1002(+)	internal_stop_codon	1165..1167(+),1180..1182(+),1042..1044(+),1009..1011(+),1000..1002(+),1147..1149(+),1270..1272(+),1288..1290(+)		WP_011263309.1	cation transporter	81.9	6.5	48.5
MGA_637	LOCUS_6240	sequence051:847..1245(+)	internal_stop_codon	640..642(+),565..567(+),1261..1263(+),754..756(+),808..810(+),1243..1245(+),1312..1314(+),634..636(+),655..657(+),700..702(+)		WP_012870273.1	DEAD/DEAH box helicase	100.0	12.8	51.5
MGA_642	LOCUS_6280	sequence052:1628..1852(+)	internal_stop_codon	1940..1942(+),1850..1852(+),1370..1372(+),1856..1858(+),1340..1342(+)		Q8KEP3	chaperone protein DnaK	98.6	11.7	77.0
MGA_643	LOCUS_6290	sequence052:2024..2278(+)	internal_stop_codon	1940..1942(+),2276..2278(+),1850..1852(+),2471..2473(+),1856..1858(+),2405..2407(+)		Q5NFG7	chaperone protein DnaK	100.0	13.1	66.7
MGA_667	LOCUS_6520	sequence057:2109..2348(-)	internal_stop_codon	2109..2111(-),1947..1949(-),1980..1982(-),2094..2096(-)		P55979	putative peroxiredoxin bcp	59.5	29.6	57.4
MGA_669	LOCUS_6540	sequence058:1672..1842(-)	internal_stop_codon	1672..1674(-),1597..1599(-),1546..1548(-),1522..1524(-),1540..1542(-)		O51596	protein translocase subunit SecD	80.4	7.7	55.6
MGA_670	LOCUS_6550	sequence058:3015..3425(-)	internal_stop_codon	3015..3017(-),2865..2867(-),3486..3488(-),3600..3602(-),2976..2978(-)		I3U4F9	putative dual-specificity RNA methyltransferase RlmN	97.1	37.2	47.7
MGA_674	LOCUS_6590	sequence059:892..1419(-)	internal_stop_codon	892..894(-),781..783(-),1432..1434(-),625..627(-)		WP_005049106.1	U32 family peptidase	100.0	38.6	57.7
MGA_679	LOCUS_6630	sequence060:843..1157(+)	internal_stop_codon	1365..1367(+),621..623(+),717..719(+),1206..1208(+),1314..1316(+),753..755(+),1347..1349(+),1155..1157(+),1290..1292(+),585..587(+),1308..1310(+),780..782(+),687..689(+),576..578(+)		WP_011182997.1	DNA translocase (stage III sporulation protein E)	99.0	10.8	57.3
MGA_686	LOCUS_6680	sequence061:1214..1543(-)	internal_stop_codon	1628..1630(-),1574..1576(-),1001..1003(-),1070..1072(-),1649..1651(-),1214..1216(-),1556..1558(-),1094..1096(-),1133..1135(-),1586..1588(-),1109..1111(-),1169..1171(-)		Q8DZU2	DNA topoisomerase 1	82.6	12.7	54.4
MGA_693	LOCUS_6740	sequence062:2590..2922(+)	internal_stop_codon	2962..2964(+),2920..2922(+)		Q9WY48	ATP-dependent DNA helicase RecG	83.6	11.4	43.0
MGA_694	LOCUS_6750	sequence062:3010..3456(+)	partial			Q8Y686	ATP-dependent DNA helicase RecG	80.4	17.2	34.7
MGA_704	LOCUS_6840	sequence065:2658..2840(+)	internal_stop_codon	3042..3044(+),2955..2957(+),3072..3074(+),2838..2840(+),3039..3041(+),2898..2900(+),2925..2927(+)		WP_011948041.1	malate dehydrogenase	100.0	15.4	65.0
MGA_709	LOCUS_6890	sequence066:3961..4113(-)	internal_stop_codon	3748..3750(-),3907..3909(-),3961..3963(-),3775..3777(-),3709..3711(-),3904..3906(-)		Q9JYE1	copper-containing nitrite reductase	90.0	11.5	55.6
MGA_713	LOCUS_6920	sequence067:2307..2519(-)	internal_stop_codon	2619..2621(-),2307..2309(-)		WP_003644375.1	RNA methyltransferase	95.7	17.8	39.7
MGA_719	LOCUS_6980	sequence068:2229..2924(-)	partial			WP_000528194.1	peptidase M50	92.2	74.7	27.6
MGA_735	LOCUS_7100	sequence072:1670..1831(-)	internal_stop_codon	1619..1621(-),1523..1525(-),1502..1504(-),1670..1672(-),1514..1516(-),1418..1420(-),1505..1507(-),1643..1645(-)		WP_000098051.1	geranyltranstransferase	81.1	13.5	58.1
MGA_742	LOCUS_7150	sequence074:279..398(-)	internal_stop_codon	420..422(-),234..236(-),279..281(-),411..413(-),429..431(-),471..473(-)		Q81J47	DNA-directed RNA polymerase subunit beta'	100.0	3.2	61.5
MGA_743	LOCUS_7160	sequence074:471..905(-)	internal_stop_codon	234..236(-),279..281(-),1194..1196(-),906..908(-),924..926(-),420..422(-),429..431(-),411..413(-),960..962(-),954..956(-),471..473(-)		B5YFV7	DNA-directed RNA polymerase subunit beta'	93.8	10.0	41.6
MGA_744	LOCUS_7170	sequence074:960..1130(-)	internal_stop_codon	1194..1196(-)		Q8DL56	DNA-directed RNA polymerase subunit gamma	89.3	8.0	64.0
MGA_745	LOCUS_7180	sequence074:1194..1439(-)	internal_stop_codon	1527..1529(-),1194..1196(-)		Q2S1Q6	DNA-directed RNA polymerase subunit beta'	100.0	5.6	61.7
MGA_746	LOCUS_7190	sequence074:1527..1850(-)	internal_stop_codon	1527..1529(-),1995..1997(-)		Q18CF3	DNA-directed RNA polymerase subunit beta'	99.1	9.0	66.0
MGA_748	LOCUS_7210	sequence074:3155..3340(-)	internal_stop_codon	3548..3550(-),3374..3376(-),3155..3157(-),3359..3361(-),3410..3412(-),3344..3346(-),3503..3505(-)		Q8E239	DNA-directed RNA polymerase subunit beta	100.0	5.1	70.5
MGA_763	LOCUS_7330	sequence078:427..924(-)	partial			WP_002195855.1	hypothetical protein	91.5	43.0	42.0
MGA_765	LOCUS_7350	sequence078:2546..2749(-)	internal_stop_codon	2762..2764(-)		WP_010891829.1	hypothetical protein	95.5	14.3	32.8
MGA_774	LOCUS_7440	sequence079:3123..3377(+)	internal_stop_codon	3459..3461(+),3468..3470(+),3375..3377(+)		P0A4C4	30S ribosomal protein S3	96.4	37.3	30.9
MGA_775	LOCUS_7450	sequence079:3495..3641(+)	internal_stop_codon	3459..3461(+),3468..3470(+),3375..3377(+)		F0KF87	30S ribosomal protein S3	97.9	17.7	63.8
MGA_785	LOCUS_7550	sequence081:3110..3253(+)	internal_stop_codon	2960..2962(+),3107..3109(+),3086..3088(+),2909..2911(+)		WP_011121843.1	transcriptional regulator	100.0	13.2	44.7
MGA_787	LOCUS_7570	sequence082:1762..2037(+)	internal_stop_codon	2035..2037(+),2179..2181(+),2068..2070(+)		Q18CF1	DNA-directed RNA polymerase subunit beta	82.4	6.1	56.0
MGA_788	LOCUS_7580	sequence082:2191..2550(+)	internal_stop_codon	2035..2037(+),2578..2580(+),2788..2790(+),2779..2781(+),2548..2550(+),2068..2070(+)		Q8EK74	DNA-directed RNA polymerase subunit beta	98.3	8.3	47.0
MGA_789	LOCUS_7590	sequence082:2590..2781(+)	internal_stop_codon	2548..2550(+),2788..2790(+),2578..2580(+),2779..2781(+)		Q18CF1	DNA-directed RNA polymerase subunit beta	100.0	5.1	66.7
MGA_790	LOCUS_7600	sequence082:2818..3027(+)	internal_stop_codon	2548..2550(+),2788..2790(+),2578..2580(+),2779..2781(+)		Q51561	DNA-directed RNA polymerase subunit beta	100.0	5.1	47.8
MGA_792	LOCUS_7610	sequence083:1501..1641(-)	internal_stop_codon	1501..1503(-)		P66928	thioredoxin	95.7	41.5	47.7
MGA_794	LOCUS_7630	sequence083:2024..2164(-)	internal_stop_codon	2276..2278(-),2213..2215(-)		WP_003434933.1	hypothetical protein	100.0	19.5	52.2
MGA_795	LOCUS_7640	sequence083:2821..3024(+)	internal_stop_codon	3172..3174(+),3226..3228(+),3022..3024(+),3166..3168(+)		WP_000253765.1	endonuclease III	94.0	28.8	41.3
MGA_798	LOCUS_7660	sequence084:779..1045(+)	internal_stop_codon	584..586(+),1043..1045(+)		NP_267411.2	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	100.0	11.6	44.4
MGA_799	LOCUS_7670	sequence084:1124..1405(+)	internal_stop_codon	1403..1405(+),1457..1459(+),1043..1045(+)		Q9PN94	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	95.7	11.7	39.3
MGA_800	LOCUS_7680	sequence084:1577..2137(+)	internal_stop_codon	1403..1405(+),1457..1459(+),2135..2137(+)		Q8DQT2	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	96.8	24.2	76.2
MGA_801	LOCUS_7690	sequence084:2231..2377(+)	internal_stop_codon	2135..2137(+)		Q8EIM0	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	89.6	5.7	58.1
MGA_804	LOCUS_7710	sequence085:1920..2111(-)	frameshift,internal_stop_codon	2298..2300(-),2244..2246(-),1920..1922(-),2352..2354(-),1719..1721(-),2181..2183(-),2373..2375(-),1893..1895(-),2214..2216(-),2295..2297(-)	1760,1781,1799	WP_005454675.1	C4-dicarboxylate ABC transporter	100.0	7.3	52.4
MGA_811	LOCUS_7760	sequence086:2776..3135(-)	internal_stop_codon	2776..2778(-)		WP_002025189.1	L-gulonolactone oxidase	92.4	23.4	36.4
MGA_813	LOCUS_7770	sequence087:208..369(+)	internal_stop_codon	484..486(+),409..411(+),514..516(+),634..636(+),367..369(+),103..105(+),631..633(+)		Q8RHB1	DNA gyrase subunit B	100.0	8.3	62.3
MGA_828	LOCUS_7880	sequence091:2237..2479(+)	internal_stop_codon	2477..2479(+),1973..1975(+),2114..2116(+),2657..2659(+),2216..2218(+),2519..2521(+),2135..2137(+)		Q8R5Z8	putative RNA methyltransferase	85.0	14.4	52.9
MGA_829	LOCUS_7890	sequence091:2522..2659(+)	internal_stop_codon	2477..2479(+),2657..2659(+),2519..2521(+)		YP_001255358.1	23S rRNA (uracil-5-)-methyltransferase RumA	100.0	9.6	51.1
MGA_833	LOCUS_7910	sequence092:1586..2005(+)	partial			WP_002025189.1	L-gulonolactone oxidase	97.8	28.9	33.8
MGA_835	LOCUS_7930	sequence093:979..1164(-)	internal_stop_codon	955..957(-),1168..1170(-),1210..1212(-),979..981(-),925..927(-),889..891(-),1252..1254(-),757..759(-)		Q181E6	ribosomal RNA small subunit methyltransferase I	96.7	21.3	59.3
MGA_845	LOCUS_8010	sequence096:246..407(+)	internal_stop_codon	450..452(+),582..584(+),405..407(+)		WP_005482406.1	sodium-independent anion transporter	66.0	6.7	74.3
MGA_846	LOCUS_8020	sequence096:912..1100(+)	internal_stop_codon	897..899(+),1098..1100(+),1140..1142(+),699..701(+)		WP_005420148.1	sodium-independent anion transporter	98.4	11.7	60.7
MGA_847	LOCUS_8030	sequence096:1149..1814(+)	internal_stop_codon	1098..1100(+),1140..1142(+)		WP_005420148.1	sodium-independent anion transporter	99.1	42.3	54.3
MGA_852	LOCUS_8060	sequence098:234..434(-)	internal_stop_codon	45..47(-),234..236(-),99..101(-),147..149(-)		Q92RB2	UPF0061 protein R00982	90.9	12.0	55.0