# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_1	LOCUS_0010	sequence001:1..1292(+)	partial			A0A0H3FP84	outer membrane protein assembly factor BamA	21.4	12.8	32.0
MGA_15	LOCUS_0150	sequence001:13794..14360(-)	partial			WP_005802891.1	hypothetical protein	71.3	63.2	25.0
MGA_40	LOCUS_0400	sequence001:51893..52531(-)	partial			WP_003122598.1	hypothetical protein	95.8	51.4	38.1
MGA_47	LOCUS_0470	sequence001:61222..61461(+)	partial			WP_005307315.1	hypothetical protein	79.7	72.9	49.2
MGA_54	LOCUS_0540	sequence001:72300..73817(-)	partial			Q9HYB8	electron transport complex subunit C	95.8	63.0	45.7
MGA_58	LOCUS_0580	sequence001:76402..77073(+)	partial			WP_011705228.1	MaoC family dehydratase	67.7	62.8	49.0
MGA_61	LOCUS_0610	sequence001:79688..79876(-)	frameshift,internal_stop_codon	80066..80068(-),79901..79903(-)	79720	WP_011143165.1	fructosamine kinase family protein	80.6	17.4	52.0
MGA_62	LOCUS_0620	sequence001:80066..80500(-)	internal_stop_codon	80066..80068(-),79901..79903(-)		WP_011143165.1	fructosamine kinase family protein	77.1	38.2	39.3
MGA_67	LOCUS_0670	sequence001:92127..92441(-)	partial			O68562	outer membrane protein assembly factor BamE	76.0	44.9	48.1
MGA_78	LOCUS_0770	sequence002:233..1123(+)	partial			WP_004186137.1	NADH dehydrogenase subunit M	99.3	56.9	65.3
MGA_86	LOCUS_0850	sequence002:11343..11846(-)	partial			WP_003815191.1	thioredoxin	70.1	71.8	35.9
MGA_104	LOCUS_1030	sequence002:30196..31812(+)	partial			WP_003114673.1	DNA polymerase III subunit gamma/tau	72.9	55.7	57.3
MGA_116	LOCUS_1150	sequence002:48412..49281(+)	partial			WP_011268562.1	prephenate dehydrogenase	97.2	52.6	44.1
MGA_117	LOCUS_1160	sequence002:49315..50634(+)	internal_stop_codon	49282..49284(+),49279..49281(+),49303..49305(+)		F0KJ26	3-phosphoshikimate 1-carboxyvinyltransferase	98.9	59.1	52.8
MGA_129	LOCUS_1280	sequence002:61057..61224(+)	partial			WP_011970719.1	cytochrome oxidase maturation protein, cbb3-type	60.0	37.9	69.7
MGA_138	LOCUS_1370	sequence002:68725..69162(+)	frameshift		69105	WP_003090946.1	hypothetical protein	89.7	39.0	43.1
MGA_139	LOCUS_1380	sequence002:69072..69848(+)	frameshift		69105	WP_003090946.1	hypothetical protein	44.2	35.6	49.6
MGA_144	LOCUS_1430	sequence002:73199..73780(-)	partial			WP_010948330.1	LPS export ABC transporter permease LptF	99.5	59.8	31.0
MGA_169	LOCUS_1680	sequence003:6057..6479(-)	partial			WP_011970954.1	pseudoazurin	62.9	60.5	38.0
MGA_180	LOCUS_1790	sequence003:20474..21292(-)	partial			WP_011260947.1	DNA polymerase I	93.8	27.3	57.6
MGA_189	LOCUS_1880	sequence003:34128..34520(+)	frameshift,internal_stop_codon	33920..33922(+),34074..34076(+),34008..34010(+),33953..33955(+)	33997	Q87S91	riboflavin biosynthesis protein	95.4	39.9	52.4
MGA_190	LOCUS_1890	sequence003:35682..36146(+)	partial			WP_011023195.1	membrane protein FxsA	69.5	82.1	41.8
MGA_199	LOCUS_1980	sequence003:47764..48981(-)	partial			WP_001264066.1	lytic transglycosylase	78.5	60.2	45.7
MGA_217	LOCUS_2160	sequence003:71543..72292(+)	partial			B1GRJ9	pseudouridine synthase	97.2	59.6	51.9
MGA_226	LOCUS_2250	sequence003:84647..85444(-)	partial			Q3IXD0	FAD:protein FMN transferase	90.9	65.8	35.5
MGA_228	LOCUS_2270	sequence004:81..3425(-)	partial			Q9HXY4	outer membrane protein assembly factor BamA	62.1	80.3	28.1
MGA_298	LOCUS_2970	sequence005:23171..23494(-)	partial			WP_011013352.1	sulfurtransferase	71.0	75.3	44.7
MGA_312	LOCUS_3110	sequence005:44726..44974(-)	frameshift,internal_stop_codon	45049..45051(-),45223..45225(-),44540..44542(-),45229..45231(-)	45180,44733,44630	F0KFN7	delta-aminolevulinic acid dehydratase	96.3	23.4	59.5
MGA_320	LOCUS_3190	sequence005:56848..57174(+)	partial			Q9HV52	protein-export membrane protein SecG	55.6	45.0	55.0
MGA_333	LOCUS_3320	sequence005:69365..69955(+)	partial			WP_003813918.1	NADH-quinone oxidoreductase subunit M	96.4	38.2	51.3
MGA_353	LOCUS_3520	sequence006:29828..30190(-)	partial			WP_004526841.1	transcriptional regulator	65.0	58.2	70.5
MGA_371	LOCUS_3700	sequence006:54959..55897(-)	partial			WP_011037015.1	hypothetical protein	55.4	58.2	29.1
MGA_388	LOCUS_3870	sequence007:7508..9865(+)	partial			Q51484	hypothetical protein	38.0	47.9	31.9
MGA_390	LOCUS_3890	sequence007:12923..13306(+)	partial			Q2RTQ3	S-adenosylmethionine decarboxylase proenzyme	91.3	67.1	39.7
MGA_418	LOCUS_4170	sequence008:1..630(+)	partial			WP_010947301.1	protein TolA	98.6	64.5	27.6
MGA_420	LOCUS_4190	sequence008:1975..2529(+)	partial			WP_002118513.1	peptidoglycan-associated lipoprotein	73.9	75.3	40.7
MGA_435	LOCUS_4340	sequence008:26771..28423(-)	partial			A0KGR9	DNA mismatch repair protein MutL	58.0	51.9	46.7
MGA_442	LOCUS_4410	sequence008:35299..36051(-)	partial			Q5E226	bifunctional ligase/repressor BirA	83.6	66.7	37.7
MGA_448	LOCUS_4470	sequence008:41795..42232(-)	frameshift,internal_stop_codon	41720..41722(-)	41806	WP_011704349.1	cell division ATP-binding protein FtsE	97.9	64.0	58.5
MGA_449	LOCUS_4480	sequence008:42244..43200(-)	partial			Q4ZM44	signal recognition particle receptor FtsY	95.6	60.2	61.8
MGA_464	LOCUS_4630	sequence009:11822..12187(+)	partial			WP_010940641.1	hypothetical protein	88.4	23.3	26.2
MGA_469	LOCUS_4680	sequence009:19439..19609(-)	internal_stop_codon	19439..19441(-),19652..19654(-)		WP_010980860.1	peptidase C39	98.2	25.2	60.0
MGA_504	LOCUS_5030	sequence010:28374..29654(+)	partial			Q8EJN8	acetyltransferase component of pyruvate dehydrogenase complex	98.8	64.7	46.8
MGA_507	LOCUS_5060	sequence010:34273..34476(-)	frameshift,internal_stop_codon	34515..34517(-),34530..34532(-),34545..34547(-)	34081,34693,34747,34216,34298,34635	WP_010946554.1	ATP-dependent Clp protease ATP-binding subunit ClpA	86.6	7.7	55.2
MGA_508	LOCUS_5070	sequence010:34934..35188(-)	frameshift,internal_stop_codon	35281..35283(-),34879..34881(-),35315..35317(-),34819..34821(-),34933..34935(-),34903..34905(-)	35305,35202,34749	WP_011037131.1	ATP-dependent Clp protease ATP-binding subunit ClpA	100.0	11.1	46.4
MGA_511	LOCUS_5100	sequence010:36505..37338(-)	partial			WP_011203968.1	phosphoserine phosphatase SerB	73.6	36.1	53.7
MGA_577	LOCUS_5740	sequence012:37227..37991(-)	partial			Q8EER3	DNA translocase FtsK	69.3	19.2	37.1
MGA_599	LOCUS_5960	sequence013:20612..20959(+)	partial			WP_010946684.1	BAX inhibitor protein	97.4	50.0	59.8
MGA_603	LOCUS_6000	sequence013:23352..23642(-)	internal_stop_codon	23721..23723(-)		WP_011057131.1	sugar kinase	89.6	20.1	38.4
MGA_604	LOCUS_6010	sequence013:23721..23906(-)	frameshift,internal_stop_codon	23720..23722(-),24089..24091(-)	24163	WP_011057131.1	sugar kinase	98.4	14.0	58.3
MGA_608	LOCUS_6050	sequence013:29891..30208(-)	frameshift,internal_stop_codon	30330..30332(-),30459..30461(-)	29945,30356,30236	WP_002808458.1	DNA-binding response regulator	91.4	42.3	45.8
MGA_652	LOCUS_6490	sequence016:4620..4988(-)	frameshift,internal_stop_codon	5192..5194(-)	5053	WP_010947844.1	MFS transporter	81.1	23.0	31.0
MGA_658	LOCUS_6550	sequence016:10698..10850(-)	frameshift,internal_stop_codon	10668..10670(-),10426..10428(-),10698..10700(-),10902..10904(-)	10528,10574	Q0P9R0	coproporphyrinogen-III oxidase	98.0	10.9	46.9
MGA_663	LOCUS_6600	sequence016:16255..16974(-)	frameshift,internal_stop_codon	16023..16025(-),16254..16256(-)	16190,16058,17054	Q8EAR2	glutamyl-tRNA reductase	100.0	57.0	42.3
MGA_678	LOCUS_6750	sequence017:6928..7539(-)	frameshift,internal_stop_codon	6927..6929(-)	7547,6758	Q9KVX6	chromosomal replication initiator protein DnaA	99.0	43.0	51.2
MGA_706	LOCUS_7020	sequence018:16115..16408(+)	frameshift,internal_stop_codon	16397..16399(+)	16378	WP_011036993.1	NUDIX hydrolase	81.4	43.7	40.0
MGA_727	LOCUS_7220	sequence019:15080..15355(+)	partial			Q8P3H9	sec-independent protein translocase protein TatB	81.3	37.9	48.6
MGA_729	LOCUS_7240	sequence019:17138..17320(-)	internal_stop_codon	17108..17110(-),17045..17047(-),17138..17140(-)		WP_003807434.1	peptidase S41	96.7	12.6	42.6
MGA_732	LOCUS_7270	sequence019:20535..20852(+)	partial			WP_003013699.1	thiosulfate sulfurtransferase	93.3	68.6	39.8
MGA_741	LOCUS_7350	sequence020:9316..10173(-)	internal_stop_codon	9316..9318(-)		WP_005798684.1	membrane protein	94.0	58.3	24.5
MGA_780	LOCUS_7740	sequence021:15161..15475(-)	partial			A0KF20	30S ribosomal protein S10	96.2	74.6	87.0
MGA_781	LOCUS_7750	sequence021:15513..16064(-)	frameshift,internal_stop_codon	16136..16138(-)	16177	NP_819280.1	elongation factor Tu	93.4	43.1	59.6
MGA_782	LOCUS_7760	sequence021:16169..16480(-)	frameshift,internal_stop_codon	16136..16138(-)	16180	P33165	elongation factor Tu	97.1	25.4	67.0
MGA_783	LOCUS_7770	sequence021:16514..17782(-)	partial			Q5ZYP6	elongation factor G	98.6	59.8	67.0
MGA_799	LOCUS_7930	sequence023:1880..2038(-)	frameshift,internal_stop_codon	2054..2056(-),2315..2317(-)	1900	WP_011074415.1	IS6 family transposase	92.3	25.9	75.0
MGA_800	LOCUS_7940	sequence023:2054..2260(-)	frameshift,internal_stop_codon	2348..2350(-),2315..2317(-),2054..2056(-)	2360,1900	WP_011074404.1	IS6 family transposase	100.0	38.1	66.7
MGA_805	LOCUS_7990	sequence023:4487..4813(-)	frameshift,internal_stop_codon	4892..4894(-)	4489	WP_011707757.1	chromosome partitioning protein ParA	96.3	48.4	37.5
MGA_807	LOCUS_8010	sequence023:5653..5859(+)	frameshift,internal_stop_codon	5858..5860(+),5561..5563(+)	5458	WP_011074415.1	IS6 family transposase	100.0	36.8	67.6
MGA_815	LOCUS_8090	sequence023:13001..13264(-)	frameshift		13023,12941,13311	WP_001165548.1	DNA-invertase	92.0	41.6	60.0
MGA_816	LOCUS_8100	sequence023:13923..14246(+)	frameshift		14243	WP_010933608.1	8-amino-7-oxononanoate synthase	81.3	21.1	32.2
MGA_817	LOCUS_8110	sequence023:14225..14728(+)	frameshift,internal_stop_codon	14727..14729(+)	14240	Q749W3	8-amino-7-oxononanoate synthase	98.2	41.9	39.6
MGA_822	LOCUS_8160	sequence024:6385..6786(-)	partial			WP_005479898.1	multidrug resistance protein	88.0	11.1	53.0
MGA_825	LOCUS_8190	sequence024:8090..8701(-)	internal_stop_codon	8801..8803(-)		WP_011071225.1	acriflavin resistance protein	98.5	19.1	44.6
MGA_829	LOCUS_8230	sequence024:10146..10805(-)	partial			WP_011016444.1	acriflavin resistance protein	73.1	44.0	27.8
MGA_842	LOCUS_8360	sequence025:8310..9101(+)	frameshift		8287	WP_002724803.1	plasmid replication initiator protein RepA	76.4	62.8	40.3
MGA_850	LOCUS_8430	sequence027:961..2601(+)	frameshift,internal_stop_codon	2599..2601(+),2716..2718(+),2755..2757(+),2611..2613(+)	2679	A0A0H3CR05	methionine--tRNA ligase	99.5	80.4	59.4
MGA_866	LOCUS_8580	sequence029:1826..2077(-)	frameshift,internal_stop_codon	2210..2212(-),2252..2254(-),2282..2284(-),2150..2152(-),2084..2086(-)	1858	WP_011074404.1	IS6 family transposase	97.6	44.2	65.4
MGA_876	LOCUS_8680	sequence029:6291..6785(-)	frameshift		6829	WP_010947844.1	MFS transporter	78.7	30.8	33.1
MGA_882	LOCUS_8740	sequence030:3334..3741(+)	internal_stop_codon	3739..3741(+)		Q9HX33	leucine--tRNA ligase	100.0	15.5	70.4
MGA_883	LOCUS_8750	sequence030:3829..5793(+)	frameshift,internal_stop_codon	3739..3741(+)	4756,4725	Q5ZVU2	leucine--tRNA ligase	99.4	79.8	50.5
MGA_907	LOCUS_8970	sequence034:3071..3469(+)	frameshift		3436,3661	Q5F8T4	cytosine-specific methyltransferase	84.8	26.5	53.6
MGA_909	LOCUS_8990	sequence034:3983..4258(+)	frameshift,internal_stop_codon	3969..3971(+)	3884	Q9JZI7	cytosine-specific methyltransferase	79.1	16.1	47.9
MGA_914	LOCUS_9040	sequence036:345..1328(+)	partial			WP_005459147.1	DNA/RNA non-specific endonuclease	57.5	67.2	29.6
MGA_918	LOCUS_9070	sequence038:702..1244(-)	frameshift		1497	P44420	thymidylate synthase	100.0	63.6	70.6
MGA_923	LOCUS_9110	sequence039:766..1344(-)	frameshift		1490	P44733	DNA recombination protein RmuC	89.6	38.2	55.2
MGA_924	LOCUS_9120	sequence039:1341..2402(-)	frameshift		1490	P44733	DNA recombination protein RmuC	59.8	46.9	38.1
MGA_931	LOCUS_9180	sequence042:1646..1867(-)	frameshift,internal_stop_codon	2050..2052(-),1978..1980(-),2059..2061(-),2137..2139(-)	1956,1637,1703,2106,1883	Q9HX33	leucine--tRNA ligase	78.1	6.5	43.9
MGA_932	LOCUS_9190	sequence042:2266..2394(-)	frameshift,internal_stop_codon	2431..2433(-),2203..2205(-),2266..2268(-),2137..2139(-)	2106	Q9HX33	leucine--tRNA ligase	97.6	4.7	80.5
MGA_942	LOCUS_9270	sequence047:281..523(-)	frameshift,internal_stop_codon	281..283(-)	112,66	WP_001313567.1	IS6 family transposase	97.5	32.1	44.9
MGA_943	LOCUS_9280	sequence047:1544..1699(-)	frameshift,internal_stop_codon	1770..1772(-),1360..1362(-)	1495,1667,1670,1559,1450,1405	WP_011074404.1	IS6 family transposase	82.4	23.2	57.1
MGA_944	LOCUS_9290	sequence048:3..302(+)	frameshift,internal_stop_codon	300..302(+)	326	WP_010930312.1	nuclease	88.9	7.6	35.2
MGA_954	LOCUS_9360	sequence053:19..159(-)	frameshift,internal_stop_codon	375..377(-),17..19(-)	242,422,215	B7N9P8	leucine--tRNA ligase	95.7	5.1	56.8
MGA_955	LOCUS_9370	sequence053:710..925(-)	frameshift,internal_stop_codon	710..712(-),989..991(-),659..661(-),974..976(-)	520	Q5E6U8	leucine--tRNA ligase	100.0	8.3	64.8
MGA_969	LOCUS_9440	sequence060:846..1127(+)	internal_stop_codon	1125..1127(+),822..824(+),1179..1181(+),666..668(+),813..815(+)		Q9ZCF7	NADH-quinone oxidoreductase subunit H	100.0	28.9	41.8
MGA_978	LOCUS_9480	sequence065:369..968(-)	internal_stop_codon	369..371(-),273..275(-)		Q9ZDH4	NADH-quinone oxidoreductase subunit D	95.5	48.8	63.2
MGA_996	LOCUS_9550	sequence082:282..497(-)	frameshift,internal_stop_codon	198..200(-),282..284(-),561..563(-),231..233(-)	209,92	Q5E6U8	leucine--tRNA ligase	100.0	8.3	66.2