[2023-03-17 10:08:50] INFO: CheckM v1.2.0
[2023-03-17 10:08:50] INFO: checkm taxonomy_wf --tab_table -f OceanDNA-a1486/cc_result.tsv -t 1 life Prokaryote OceanDNA-a1486/checkm_input OceanDNA-a1486/checkm_result
[2023-03-17 10:08:50] INFO: CheckM data: /var/lib/cwl/stga853e666-b363-4974-a2da-5bbb30a656e7/dqc_reference/checkm_data
[2023-03-17 10:08:50] INFO: [CheckM - taxon_set] Generate taxonomic-specific marker set.
[2023-03-17 10:08:54] INFO: Marker set for Prokaryote contains 56 marker genes arranged in 24 sets.
[2023-03-17 10:08:54] INFO: Marker set inferred from 5656 reference genomes.
[2023-03-17 10:08:54] INFO: Marker set written to: OceanDNA-a1486/checkm_result/Prokaryote.ms
[2023-03-17 10:08:54] INFO: { Current stage: 0:00:04.252 || Total: 0:00:04.252 }
[2023-03-17 10:08:54] INFO: [CheckM - analyze] Identifying marker genes in bins.
[2023-03-17 10:08:54] INFO: Identifying marker genes in 1 bins with 1 threads:
[2023-03-17 10:09:10] INFO: Saving HMM info to file.
[2023-03-17 10:09:10] INFO: { Current stage: 0:00:15.758 || Total: 0:00:20.010 }
[2023-03-17 10:09:10] INFO: Parsing HMM hits to marker genes:
[2023-03-17 10:09:10] INFO: Aligning marker genes with multiple hits in a single bin:
[2023-03-17 10:09:10] INFO: { Current stage: 0:00:00.076 || Total: 0:00:20.087 }
[2023-03-17 10:09:10] INFO: Calculating genome statistics for 1 bins with 1 threads:
[2023-03-17 10:09:10] INFO: { Current stage: 0:00:00.065 || Total: 0:00:20.153 }
[2023-03-17 10:09:10] INFO: [CheckM - qa] Tabulating genome statistics.
[2023-03-17 10:09:10] INFO: Calculating AAI between multi-copy marker genes.
[2023-03-17 10:09:10] INFO: Reading HMM info from file.
[2023-03-17 10:09:10] INFO: Parsing HMM hits to marker genes:
[2023-03-17 10:09:10] INFO: QA information written to: OceanDNA-a1486/cc_result.tsv
[2023-03-17 10:09:10] INFO: { Current stage: 0:00:00.052 || Total: 0:00:20.205 }