{ "tc_result": [ { "organism_name": "Arcobacter nitrofigilis", "strain": "strain=DSM 7299", "accession": "GCA_000092245.1", "taxid": 28199, "species_taxid": 28199, "relation_to_type": "type", "validated": true, "ani": 91.9267, "matched_fragments": 689, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter venerupis", "strain": "strain=LMG 26156", "accession": "GCA_013201665.1", "taxid": 1054033, "species_taxid": 1054033, "relation_to_type": "type", "validated": true, "ani": 79.4909, "matched_fragments": 380, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter venerupis", "strain": "strain=CECT7836", "accession": "GCA_004023405.1", "taxid": 1054033, "species_taxid": 1054033, "relation_to_type": "type", "validated": true, "ani": 79.4731, "matched_fragments": 369, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter ellisii", "strain": "strain=CECT 7837", "accession": "GCA_004115815.1", "taxid": 913109, "species_taxid": 913109, "relation_to_type": "type", "validated": true, "ani": 79.341, "matched_fragments": 318, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter ellisii", "strain": "strain=LMG 26155", "accession": "GCA_003544915.1", "taxid": 913109, "species_taxid": 913109, "relation_to_type": "type", "validated": true, "ani": 79.2985, "matched_fragments": 324, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter suis", "strain": "strain=CECT 7833", "accession": "GCA_003544815.1", "taxid": 1278212, "species_taxid": 1278212, "relation_to_type": "type", "validated": true, "ani": 79.0853, "matched_fragments": 316, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter caeni", "strain": "strain=RW17-10", "accession": "GCA_003063245.1", "taxid": 1912877, "species_taxid": 1912877, "relation_to_type": "type", "validated": true, "ani": 79.0309, "matched_fragments": 303, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter molluscorum", "strain": "strain=CECT 7696", "accession": "GCA_003544935.1", "taxid": 1032072, "species_taxid": 1032072, "relation_to_type": "type", "validated": true, "ani": 79.0254, "matched_fragments": 355, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter cloacae", "strain": "strain=CECT 7834", "accession": "GCA_004115805.1", "taxid": 1054034, "species_taxid": 1054034, "relation_to_type": "type", "validated": true, "ani": 79.0158, "matched_fragments": 308, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter molluscorum", "strain": "strain=F98-3", "accession": "GCA_002701265.1", "taxid": 1032072, "species_taxid": 1032072, "relation_to_type": "type", "validated": true, "ani": 79.0093, "matched_fragments": 348, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter suis", "strain": "strain=CECT7833", "accession": "GCA_004023465.1", "taxid": 1278212, "species_taxid": 1278212, "relation_to_type": "type", "validated": true, "ani": 78.9915, "matched_fragments": 314, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter mytili", "strain": "strain=CECT 7386", "accession": "GCA_004116555.1", "taxid": 603050, "species_taxid": 603050, "relation_to_type": "type", "validated": true, "ani": 78.9004, "matched_fragments": 335, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter bivalviorum", "strain": "strain=LMG 26154", "accession": "GCA_003346815.1", "taxid": 663364, "species_taxid": 663364, "relation_to_type": "type", "validated": true, "ani": 78.8552, "matched_fragments": 324, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter mytili", "strain": "strain=LMG 24559", "accession": "GCA_003346775.1", "taxid": 603050, "species_taxid": 603050, "relation_to_type": "type", "validated": true, "ani": 78.8372, "matched_fragments": 342, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter bivalviorum", "strain": "strain=CECT 7835", "accession": "GCA_004116675.1", "taxid": 663364, "species_taxid": 663364, "relation_to_type": "type", "validated": true, "ani": 78.8214, "matched_fragments": 323, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Halarcobacter] arenosus", "strain": "strain=CAU 1517", "accession": "GCA_005771535.1", "taxid": 2576037, "species_taxid": 2576037, "relation_to_type": "type", "validated": true, "ani": 78.7826, "matched_fragments": 351, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter canalis", "strain": "strain=F138-33", "accession": "GCA_002723485.1", "taxid": 1912871, "species_taxid": 1912871, "relation_to_type": "type", "validated": true, "ani": 78.7564, "matched_fragments": 336, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter defluvii", "strain": "strain=CECT 7697", "accession": "GCA_004115775.1", "taxid": 873191, "species_taxid": 873191, "relation_to_type": "type", "validated": true, "ani": 78.7369, "matched_fragments": 321, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter defluvii", "strain": "strain=LMG 25694", "accession": "GCA_013201725.1", "taxid": 873191, "species_taxid": 873191, "relation_to_type": "type", "validated": true, "ani": 78.7209, "matched_fragments": 329, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter butzleri", "strain": "strain=NCTC 12481", "accession": "GCA_900187115.1", "taxid": 28197, "species_taxid": 28197, "relation_to_type": "type", "validated": true, "ani": 78.6457, "matched_fragments": 296, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter butzleri", "strain": "strain=LMG 10828", "accession": "GCA_024584145.1", "taxid": 28197, "species_taxid": 28197, "relation_to_type": "type", "validated": true, "ani": 78.6369, "matched_fragments": 296, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter butzleri", "strain": "strain=RM4018", "accession": "GCA_000014025.1", "taxid": 28197, "species_taxid": 28197, "relation_to_type": "type", "validated": true, "ani": 78.5912, "matched_fragments": 300, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Arcobacter] porcinus", "strain": "strain=CCUG 56899", "accession": "GCA_004299785.2", "taxid": 1935204, "species_taxid": 1935204, "relation_to_type": "type", "validated": true, "ani": 78.0557, "matched_fragments": 203, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Arcobacter] porcinus", "strain": "strain=LMG 24487", "accession": "GCA_024584075.1", "taxid": 1935204, "species_taxid": 1935204, "relation_to_type": "type", "validated": true, "ani": 77.9969, "matched_fragments": 206, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 75.93, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_004116465.1", "gtdb_species": "s__Arcobacter sp004116465", "ani": 97.7938, "matched_fragments": 736, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Arcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000092245.1", "gtdb_species": "s__Arcobacter nitrofigilis", "ani": 91.9267, "matched_fragments": 689, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Arcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002869535.1", "gtdb_species": "s__Arcobacter sp002869535", "ani": 84.2533, "matched_fragments": 550, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Arcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002869565.1", "gtdb_species": "s__Halarcobacter sp002869565", "ani": 79.8198, "matched_fragments": 405, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013201665.1", "gtdb_species": "s__Aliarcobacter venerupis", "ani": 79.4913, "matched_fragments": 380, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003544815.1", "gtdb_species": "s__Aliarcobacter suis", "ani": 79.0999, "matched_fragments": 315, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003544935.1", "gtdb_species": "s__Malaciobacter molluscorum", "ani": 79.0345, "matched_fragments": 354, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Malaciobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.44", "min_intra_species_ani": "98.88", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003063245.1", "gtdb_species": "s__Aliarcobacter caeni", "ani": 79.022, "matched_fragments": 303, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001895145.1", "gtdb_species": "s__Halarcobacter sp001895145", "ani": 79.012, "matched_fragments": 336, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003252105.1", "gtdb_species": "s__Halarcobacter sp003252105", "ani": 78.9902, "matched_fragments": 318, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003346815.1", "gtdb_species": "s__Halarcobacter bivalviorum", "ani": 78.8608, "matched_fragments": 323, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "96.46", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001956695.1", "gtdb_species": "s__Poseidonibacter parvus", "ani": 78.7691, "matched_fragments": 305, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "98.33", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009208075.1", "gtdb_species": "s__Poseidonibacter sp009208075", "ani": 78.7586, "matched_fragments": 321, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.63", "min_intra_species_ani": "99.63", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900187115.1", "gtdb_species": "s__Aliarcobacter butzleri", "ani": 78.6321, "matched_fragments": 297, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.53", "min_intra_species_ani": "96.98", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", "num_clustered_genomes": 50, "status": "-" }, { "accession": "GCA_001655195.1", "gtdb_species": "s__Arcobacter_A sp001655195", "ani": 78.2089, "matched_fragments": 220, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Arcobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004299785.2", "gtdb_species": "s__Aliarcobacter porcinus", "ani": 78.0399, "matched_fragments": 204, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.76", "min_intra_species_ani": "98.06", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_003316695.1", "gtdb_species": "s__Aliarcobacter sp003316695", "ani": 77.9379, "matched_fragments": 237, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.67", "min_intra_species_ani": "97.67", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" } ] }