{ "tc_result": [ { "organism_name": "Hyphomonas atlantica", "strain": "strain=22II1-22F38", "accession": "GCA_000682715.1", "taxid": 1280948, "species_taxid": 1280948, "relation_to_type": "type", "validated": true, "ani": 87.1796, "matched_fragments": 563, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas pacifica", "strain": "strain=T16B2", "accession": "GCA_000682675.1", "taxid": 1280941, "species_taxid": 1280941, "relation_to_type": "type", "validated": true, "ani": 79.5688, "matched_fragments": 362, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas beringensis", "strain": "strain=25B14_1", "accession": "GCA_000682755.1", "taxid": 1280946, "species_taxid": 1280946, "relation_to_type": "type", "validated": true, "ani": 79.5569, "matched_fragments": 391, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas 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"species_taxid": 2866160, "relation_to_type": "type", "validated": true, "ani": 77.5466, "matched_fragments": 178, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Henriciella aquimarina", "strain": "strain=LMG 24711", "accession": "GCA_002088975.1", "taxid": 545261, "species_taxid": 545261, "relation_to_type": "type", "validated": true, "ani": 77.0626, "matched_fragments": 126, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Henriciella mobilis", "strain": "strain=M65", "accession": "GCA_003576315.1", "taxid": 2305467, "species_taxid": 2305467, "relation_to_type": "type", "validated": true, "ani": 76.8806, "matched_fragments": 135, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Henriciella marina", "strain": "strain=DSM 19595", "accession": "GCA_000376805.1", "taxid": 453851, "species_taxid": 453851, "relation_to_type": "type", "validated": true, "ani": 76.6989, "matched_fragments": 100, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 82.95, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000682715.1", "gtdb_species": "s__Hyphomonas atlantica", "ani": 87.1796, "matched_fragments": 563, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.47", "min_intra_species_ani": "98.11", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_017792385.1", "gtdb_species": "s__Hyphomonas sp017792385", "ani": 82.54, "matched_fragments": 492, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002414505.1", "gtdb_species": "s__Hyphomonas sp002414505", "ani": 81.3175, "matched_fragments": 407, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "98.84", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.74", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000682775.1", "gtdb_species": "s__Hyphomonas sp000682775", "ani": 80.9121, "matched_fragments": 455, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.72", "min_intra_species_ani": "95.47", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", "num_clustered_genomes": 38, "status": "-" }, { "accession": "GCA_018222605.1", "gtdb_species": "s__Hyphomonas sp002695785", "ani": 79.8344, "matched_fragments": 402, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.58", "min_intra_species_ani": "99.58", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000682675.1", "gtdb_species": "s__Hyphomonas pacifica", "ani": 79.5831, "matched_fragments": 361, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.59", "min_intra_species_ani": "99.19", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000682755.1", "gtdb_species": "s__Hyphomonas beringensis", "ani": 79.5569, "matched_fragments": 391, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014763715.1", "gtdb_species": "s__Hyphomonas sp014763715", "ani": 78.6246, "matched_fragments": 274, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002700305.1", "gtdb_species": "s__Hyphomonas sp002700305", "ani": 78.5384, "matched_fragments": 274, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.48", "min_intra_species_ani": "99.29", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000685215.1", "gtdb_species": "s__Hyphomonas jannaschiana", "ani": 78.42, "matched_fragments": 284, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000961695.1", "gtdb_species": "s__Hyphomonas sp000961695", "ani": 78.2429, "matched_fragments": 271, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016125515.1", "gtdb_species": "s__Hyphomonas sp016125515", "ani": 77.413, "matched_fragments": 175, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016712445.1", "gtdb_species": "s__Hyphomonas sp016712445", "ani": 77.1764, "matched_fragments": 179, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000376805.1", "gtdb_species": "s__Henriciella marina", "ani": 76.6989, "matched_fragments": 100, "total_fragments": 660, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Henriciella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }