{ "tc_result": [ { "organism_name": "Hyphomonas atlantica", "strain": "strain=22II1-22F38", "accession": "GCA_000682715.1", "taxid": 1280948, "species_taxid": 1280948, "relation_to_type": "type", "validated": true, "ani": 99.3219, "matched_fragments": 832, "total_fragments": 868, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hyphomonas beringensis", "strain": "strain=25B14_1", "accession": "GCA_000682755.1", "taxid": 1280946, "species_taxid": 1280946, "relation_to_type": "type", "validated": true, "ani": 79.342, "matched_fragments": 452, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas pacifica", "strain": "strain=T16B2", "accession": "GCA_000682675.1", "taxid": 1280941, "species_taxid": 1280941, "relation_to_type": "type", "validated": true, "ani": 79.2288, "matched_fragments": 419, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas jannaschiana", "strain": "strain=VP2", "accession": "GCA_000685215.1", "taxid": 86, "species_taxid": 86, "relation_to_type": "type", "validated": true, "ani": 78.1778, "matched_fragments": 341, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas adhaerens", "strain": "strain=MHS-3", "accession": "GCA_000685235.1", "taxid": 81029, "species_taxid": 81029, "relation_to_type": "type", "validated": true, "ani": 78.1742, "matched_fragments": 311, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas chukchiensis", "strain": "strain=BH-BN04-4", "accession": "GCA_000682695.1", "taxid": 1280947, "species_taxid": 1280947, "relation_to_type": "type", "validated": true, "ani": 77.7268, "matched_fragments": 297, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas oceanitis", "strain": "strain=SCH89", "accession": "GCA_000685295.1", "taxid": 81033, "species_taxid": 81033, "relation_to_type": "type", "validated": true, "ani": 77.693, "matched_fragments": 278, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas johnsonii", "strain": "strain=MHS-2", "accession": "GCA_000685275.1", "taxid": 81031, "species_taxid": 81031, "relation_to_type": "type", "validated": true, "ani": 77.4766, "matched_fragments": 264, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas sediminis", "strain": "strain=WL0036", "accession": "GCA_019679475.1", "taxid": 2866160, "species_taxid": 2866160, "relation_to_type": "type", "validated": true, "ani": 77.2937, "matched_fragments": 213, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Henriciella pelagia", "strain": "strain=CGMCC 1.15928", "accession": "GCA_014644035.1", "taxid": 1977912, "species_taxid": 1977912, "relation_to_type": "type", "validated": true, "ani": 76.7001, "matched_fragments": 147, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Henriciella pelagia", "strain": "strain=LA220", "accession": "GCA_002088945.1", "taxid": 1977912, "species_taxid": 1977912, "relation_to_type": "type", "validated": true, "ani": 76.6587, "matched_fragments": 146, "total_fragments": 868, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 80.56, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000682715.1", "gtdb_species": "s__Hyphomonas atlantica", "ani": 99.3219, "matched_fragments": 832, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.47", "min_intra_species_ani": "98.11", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_017792385.1", "gtdb_species": "s__Hyphomonas sp017792385", "ani": 82.3488, "matched_fragments": 604, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002414505.1", "gtdb_species": "s__Hyphomonas sp002414505", "ani": 81.0332, "matched_fragments": 500, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "98.84", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.74", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000682775.1", "gtdb_species": "s__Hyphomonas sp000682775", "ani": 80.7652, "matched_fragments": 574, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.72", "min_intra_species_ani": "95.47", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", "num_clustered_genomes": 38, "status": "-" }, { "accession": "GCA_018222605.1", "gtdb_species": "s__Hyphomonas sp002695785", "ani": 79.5828, "matched_fragments": 434, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.58", "min_intra_species_ani": "99.58", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { 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sp000961795", "ani": 77.7621, "matched_fragments": 265, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000685275.1", "gtdb_species": "s__Hyphomonas johnsonii", "ani": 77.4883, "matched_fragments": 263, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018830285.1", "gtdb_species": "s__Hyphomonas sp018830285", "ani": 77.4859, "matched_fragments": 255, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003486945.1", "gtdb_species": "s__Hyphomonas sp003486945", "ani": 76.703, "matched_fragments": 161, "total_fragments": 868, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }