{ "tc_result": [ { "organism_name": "Ponticaulis koreensis", "strain": "strain=DSM 19734", "accession": "GCA_000420665.1", "taxid": 1123045, "species_taxid": 1123045, "relation_to_type": "type", "validated": true, "ani": 79.7379, "matched_fragments": 448, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Henriciella litoralis", "strain": "strain=DSM 22014", "accession": "GCA_002088935.1", "taxid": 568102, "species_taxid": 568102, "relation_to_type": "type", "validated": true, "ani": 76.3482, "matched_fragments": 76, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas beringensis", "strain": "strain=25B14_1", "accession": "GCA_000682755.1", "taxid": 1280946, "species_taxid": 1280946, "relation_to_type": "type", "validated": true, "ani": 76.3316, "matched_fragments": 63, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Henriciella algicola", "strain": "strain=CCUG67844", "accession": "GCA_003576245.1", "taxid": 1608422, "species_taxid": 1608422, "relation_to_type": "type", "validated": true, "ani": 76.1439, "matched_fragments": 79, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas oceanitis", "strain": "strain=SCH89", "accession": "GCA_000685295.1", "taxid": 81033, "species_taxid": 81033, "relation_to_type": "type", "validated": true, "ani": 76.0986, "matched_fragments": 51, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Henriciella pelagia", "strain": "strain=LA220", "accession": "GCA_002088945.1", "taxid": 1977912, "species_taxid": 1977912, "relation_to_type": "type", "validated": true, "ani": 75.9744, "matched_fragments": 50, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas adhaerens", "strain": "strain=MHS-3", "accession": "GCA_000685235.1", "taxid": 81029, "species_taxid": 81029, "relation_to_type": "type", "validated": true, "ani": 75.9733, "matched_fragments": 58, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Henriciella pelagia", "strain": "strain=CGMCC 1.15928", "accession": "GCA_014644035.1", "taxid": 1977912, "species_taxid": 1977912, "relation_to_type": "type", "validated": true, "ani": 75.9469, "matched_fragments": 51, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas pacifica", "strain": "strain=T16B2", "accession": "GCA_000682675.1", "taxid": 1280941, "species_taxid": 1280941, "relation_to_type": "type", "validated": true, "ani": 75.8595, "matched_fragments": 74, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Henriciella marina", "strain": "strain=DSM 19595", "accession": "GCA_000376805.1", "taxid": 453851, "species_taxid": 453851, "relation_to_type": "type", "validated": true, "ani": 75.8453, "matched_fragments": 53, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas chukchiensis", "strain": "strain=BH-BN04-4", "accession": "GCA_000682695.1", "taxid": 1280947, "species_taxid": 1280947, "relation_to_type": "type", "validated": true, "ani": 75.6614, "matched_fragments": 52, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas sediminis", "strain": "strain=WL0036", "accession": "GCA_019679475.1", "taxid": 2866160, "species_taxid": 2866160, "relation_to_type": "type", "validated": true, "ani": 75.6286, "matched_fragments": 57, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 94.91, "contamination": 25.38, "strain_heterogeneity": 57.14 }, "gtdb_result": [ { "accession": "GCA_002173095.1", "gtdb_species": "s__Ponticaulis sp002173095", "ani": 99.9468, "matched_fragments": 1034, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Ponticaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_002338565.1", "gtdb_species": "s__Ponticaulis sp002338565", "ani": 80.7202, "matched_fragments": 506, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Ponticaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.86", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_002723155.1", "gtdb_species": "s__Ponticaulis sp002723155", "ani": 80.1363, "matched_fragments": 490, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Ponticaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.28", "min_intra_species_ani": "99.28", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000420665.1", "gtdb_species": "s__Ponticaulis koreensis", "ani": 79.7264, "matched_fragments": 449, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Ponticaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002701295.1", "gtdb_species": "s__Ponticaulis sp002701295", "ani": 77.9247, "matched_fragments": 229, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Ponticaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002692725.1", "gtdb_species": "s__Ponticaulis sp002692725", "ani": 77.553, "matched_fragments": 269, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Ponticaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002699325.1", "gtdb_species": "s__Ponticaulis sp002699325", "ani": 77.2748, "matched_fragments": 210, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Ponticaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000685295.1", "gtdb_species": "s__Hyphomonas oceanitis", "ani": 76.0986, "matched_fragments": 51, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018222605.1", "gtdb_species": "s__Hyphomonas sp002695785", "ani": 76.0852, "matched_fragments": 76, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.58", "min_intra_species_ani": "99.58", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000685235.1", "gtdb_species": "s__Hyphomonas adhaerens", "ani": 75.9979, "matched_fragments": 57, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.03", "min_intra_species_ani": "96.92", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.82", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002088945.1", "gtdb_species": "s__Henriciella pelagia", "ani": 75.9744, "matched_fragments": 50, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Henriciella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000682675.1", "gtdb_species": "s__Hyphomonas pacifica", "ani": 75.8595, "matched_fragments": 74, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.59", "min_intra_species_ani": "99.19", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000682695.1", "gtdb_species": "s__Hyphomonas chukchiensis", "ani": 75.6614, "matched_fragments": 52, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Hyphomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }