{ "tc_result": [ { "organism_name": "Marinicaulis flavus", "strain": "strain=SY-3-19", "accession": "GCA_002943565.1", "taxid": 2058213, "species_taxid": 2058213, "relation_to_type": "type", "validated": true, "ani": 79.9417, "matched_fragments": 622, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisalinus flavus", "strain": "strain=D11M-2", "accession": "GCA_022559625.1", "taxid": 1526572, "species_taxid": 1526572, "relation_to_type": "type", "validated": true, "ani": 76.8472, "matched_fragments": 136, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisalinus luteolus", "strain": "strain=CGMCC 1.14984", "accession": "GCA_014640455.1", "taxid": 1566827, "species_taxid": 1566827, "relation_to_type": "type", "validated": true, "ani": 76.8017, "matched_fragments": 123, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisalinus flavus", "strain": "strain=CGMCC 1.12921", "accession": "GCA_014640095.1", "taxid": 1526572, "species_taxid": 1526572, "relation_to_type": "type", "validated": true, "ani": 76.7913, "matched_fragments": 145, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisalinus flavus", "strain": "strain=D11M-2", "accession": "GCA_014534785.1", "taxid": 1526572, "species_taxid": 1526572, "relation_to_type": "type", "validated": true, "ani": 76.7809, "matched_fragments": 145, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amphiplicatus metriothermophilus", "strain": "strain=CGMCC 1.12710", "accession": "GCA_900199215.1", "taxid": 1519374, "species_taxid": 1519374, "relation_to_type": "type", "validated": true, "ani": 76.7551, "matched_fragments": 255, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amphiplicatus metriothermophilus", "strain": "strain=DSM 105738", "accession": "GCA_014199495.1", "taxid": 1519374, "species_taxid": 1519374, "relation_to_type": "type", "validated": true, "ani": 76.7513, "matched_fragments": 253, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parvularcula marina", "strain": "strain=SM1705", "accession": "GCA_003399445.1", "taxid": 2292771, "species_taxid": 2292771, "relation_to_type": "type", "validated": true, "ani": 76.1945, "matched_fragments": 93, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Henriciella pelagia", "strain": "strain=LA220", "accession": "GCA_002088945.1", "taxid": 1977912, "species_taxid": 1977912, "relation_to_type": "type", "validated": true, "ani": 76.0354, "matched_fragments": 60, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Henriciella pelagia", "strain": "strain=CGMCC 1.15928", "accession": "GCA_014644035.1", "taxid": 1977912, "species_taxid": 1977912, "relation_to_type": "type", "validated": true, "ani": 75.9981, "matched_fragments": 60, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium alhagi", "strain": "strain=CCNWXJ12-2", "accession": "GCA_000236565.2", "taxid": 475067, "species_taxid": 475067, "relation_to_type": "type", "validated": true, "ani": 75.9312, "matched_fragments": 72, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium temperatum", "strain": "strain=SDW018", "accession": "GCA_002284575.1", "taxid": 241416, "species_taxid": 241416, "relation_to_type": "type", "validated": true, "ani": 75.9184, "matched_fragments": 76, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium frederickii", "strain": "strain=CNPSo 3426", "accession": "GCA_004570865.1", "taxid": 2560054, "species_taxid": 2560054, "relation_to_type": "type", "validated": true, "ani": 75.7861, "matched_fragments": 91, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium album", "strain": "strain=XQ2", "accession": "GCA_009708035.1", "taxid": 2665159, "species_taxid": 2665159, "relation_to_type": "type", "validated": true, "ani": 75.7563, "matched_fragments": 64, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oricola indica", "strain": "strain=JL-62", "accession": "GCA_019966595.1", "taxid": 2872591, "species_taxid": 2872591, "relation_to_type": "type", "validated": true, "ani": 75.7187, "matched_fragments": 81, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter phragmitetus", "strain": "strain=NCTC13350", "accession": "GCA_900454465.1", "taxid": 121719, "species_taxid": 121719, "relation_to_type": "suspected-type", "validated": true, "ani": 75.6592, "matched_fragments": 70, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium shewense", "strain": "strain=ERR11", "accession": "GCA_900094605.1", "taxid": 1761772, "species_taxid": 1761772, "relation_to_type": "type", "validated": true, "ani": 75.6203, "matched_fragments": 94, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diazoefficiens", "strain": "strain=USDA 110", "accession": "GCA_001642675.1", "taxid": 1355477, "species_taxid": 1355477, "relation_to_type": "type", "validated": true, "ani": 75.5227, "matched_fragments": 100, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium aeschynomenes", "strain": "strain=83002", "accession": "GCA_013178945.1", "taxid": 2734909, "species_taxid": 2734909, "relation_to_type": "type", "validated": true, "ani": 75.5122, "matched_fragments": 104, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diazoefficiens", "strain": "strain=USDA110", "accession": "GCA_000011365.1", "taxid": 1355477, "species_taxid": 1355477, "relation_to_type": "type", "validated": true, "ani": 75.4893, "matched_fragments": 98, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium yuanmingense", "strain": "strain=CCBAU 10071", "accession": "GCA_900094575.1", "taxid": 108015, "species_taxid": 108015, "relation_to_type": "type", "validated": true, "ani": 75.4686, "matched_fragments": 83, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoligotrophos defluvii", "strain": "strain=lm1", "accession": "GCA_005281615.1", "taxid": 2561934, "species_taxid": 2561934, "relation_to_type": "type", "validated": true, "ani": 75.2479, "matched_fragments": 57, "total_fragments": 1049, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.12, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_002943565.1", "gtdb_species": "s__Marinicaulis flavus", "ani": 79.9455, "matched_fragments": 622, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Marinicaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002704915.1", "gtdb_species": "s__Marinicaulis sp002704915", "ani": 79.4433, "matched_fragments": 547, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Marinicaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002388885.1", "gtdb_species": "s__Marinicaulis sp002388885", "ani": 78.227, "matched_fragments": 367, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Marinicaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001657385.1", "gtdb_species": "s__Marinicaulis sp001657385", "ani": 77.4748, "matched_fragments": 317, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Marinicaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902826095.1", "gtdb_species": "s__CV81 sp902826095", "ani": 76.9944, "matched_fragments": 209, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__CV81", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013002535.1", "gtdb_species": "s__Marinicaulis sp013002535", "ani": 76.8434, "matched_fragments": 162, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Marinicaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "99.49", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_001767925.1", "gtdb_species": "s__CV81 sp001767925", "ani": 76.8387, "matched_fragments": 220, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__CV81", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016125425.1", "gtdb_species": "s__Amphiplicatus sp016125425", "ani": 76.7744, "matched_fragments": 207, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Amphiplicatus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013151435.1", "gtdb_species": "s__Marinicaulis sp013151435", "ani": 76.1844, "matched_fragments": 103, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Marinicaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.18", "min_intra_species_ani": "97.18", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002088945.1", "gtdb_species": "s__Henriciella pelagia", "ani": 76.0354, "matched_fragments": 60, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Hyphomonadaceae;g__Henriciella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004570865.1", "gtdb_species": "s__Bradyrhizobium frederickii", "ani": 75.7861, "matched_fragments": 91, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": "97.32", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001375595.1", "gtdb_species": "s__Phenylobacterium immobile", "ani": 75.7264, "matched_fragments": 57, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Phenylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009811655.1", "gtdb_species": "s__Methylosinus sp009811655", "ani": 75.5408, "matched_fragments": 83, "total_fragments": 1049, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylosinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }