{ "tc_result": [ { "organism_name": "Parvibaculum lavamentivorans", "strain": "strain=DS-1", "accession": "GCA_000017565.1", "taxid": 256618, "species_taxid": 256618, "relation_to_type": "type", "validated": true, "ani": 81.9521, "matched_fragments": 776, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parvibaculum indicum", "strain": "strain=DSM 25305", "accession": "GCA_011762095.1", "taxid": 562969, "species_taxid": 562969, "relation_to_type": "type", "validated": true, "ani": 79.5165, "matched_fragments": 580, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parvibaculum sedimenti", "strain": "strain=HXT-9", "accession": "GCA_009184905.1", "taxid": 2608632, "species_taxid": 2608632, "relation_to_type": "type", "validated": true, "ani": 79.1097, "matched_fragments": 520, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidicaulis marinus", "strain": "strain=MA2", "accession": "GCA_000739695.1", "taxid": 1333998, "species_taxid": 1333998, "relation_to_type": "type", "validated": true, "ani": 77.4002, "matched_fragments": 311, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phreatobacter oligotrophus", "strain": "strain=DSM 25521", "accession": "GCA_003046185.1", "taxid": 1122261, "species_taxid": 1122261, "relation_to_type": "type", "validated": true, "ani": 76.805, "matched_fragments": 177, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia hirudinis", "strain": "strain=DSM 25966", "accession": "GCA_014196455.1", "taxid": 1293440, "species_taxid": 1293440, "relation_to_type": "type", "validated": true, "ani": 76.7451, "matched_fragments": 181, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyruvatibacter mobilis", "strain": "strain=GYP-11", "accession": "GCA_009910475.1", "taxid": 1712261, "species_taxid": 1712261, "relation_to_type": "type", "validated": true, "ani": 76.6537, "matched_fragments": 216, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 76.58, "matched_fragments": 192, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acuticoccus mangrovi", "strain": "strain=B2012", "accession": "GCA_016411865.1", "taxid": 2796142, "species_taxid": 2796142, "relation_to_type": "type", "validated": true, "ani": 76.5771, "matched_fragments": 135, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stappia albiluteola", "strain": "strain=F7233", "accession": "GCA_014050225.1", "taxid": 2758565, "species_taxid": 2758565, "relation_to_type": "type", "validated": true, "ani": 76.5613, "matched_fragments": 165, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoligotrophos defluvii", "strain": "strain=lm1", "accession": "GCA_005281615.1", "taxid": 2561934, "species_taxid": 2561934, "relation_to_type": "type", "validated": true, "ani": 76.4922, "matched_fragments": 124, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium frederickii", "strain": "strain=CNPSo 3426", "accession": "GCA_004570865.1", "taxid": 2560054, "species_taxid": 2560054, "relation_to_type": "type", "validated": true, "ani": 76.3973, "matched_fragments": 181, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium agreste", "strain": "strain=CNPSo 4010", "accession": "GCA_016031625.1", "taxid": 2751811, "species_taxid": 2751811, "relation_to_type": "type", "validated": true, "ani": 76.3515, "matched_fragments": 159, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium sacchari", "strain": "strain=p9-20", "accession": "GCA_002068095.1", "taxid": 1399419, "species_taxid": 1399419, "relation_to_type": "type", "validated": true, "ani": 76.3509, "matched_fragments": 162, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afipia broomeae", "strain": "strain=ATCC 49717", "accession": "GCA_000314675.2", "taxid": 56946, "species_taxid": 56946, "relation_to_type": "type", "validated": true, "ani": 76.3393, "matched_fragments": 132, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stappia taiwanensis", "strain": "strain=DSM 23284", "accession": "GCA_013868145.1", "taxid": 992267, "species_taxid": 992267, "relation_to_type": "type", "validated": true, "ani": 76.3051, "matched_fragments": 132, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stappia taiwanensis", "strain": "strain=CCM 7757", "accession": "GCA_014635285.1", "taxid": 992267, "species_taxid": 992267, "relation_to_type": "type", "validated": true, "ani": 76.2776, "matched_fragments": 134, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovirga rhinocerotis", "strain": "strain=DSM 25903", "accession": "GCA_004363955.1", "taxid": 1339210, "species_taxid": 1339210, "relation_to_type": "type", "validated": true, "ani": 76.2437, "matched_fragments": 155, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagibacterium limicola", "strain": "strain=NAJP-14", "accession": "GCA_015694405.1", "taxid": 2791022, "species_taxid": 2791022, "relation_to_type": "type", "validated": true, "ani": 76.1564, "matched_fragments": 59, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium isbiliense", "strain": "strain=DSM 17168", "accession": "GCA_022179325.1", "taxid": 315478, "species_taxid": 315478, "relation_to_type": "type", "validated": true, "ani": 75.9599, "matched_fragments": 172, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus thiosulfatophilus", "strain": "strain=RB-3", "accession": "GCA_017311575.1", "taxid": 35813, "species_taxid": 35813, "relation_to_type": "type", "validated": true, "ani": 75.5589, "matched_fragments": 92, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus microcysteis", "strain": "strain=NIBR12", "accession": "GCA_014764365.1", "taxid": 2771361, "species_taxid": 2771361, "relation_to_type": "type", "validated": true, "ani": 75.3823, "matched_fragments": 93, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002480495.1", "gtdb_species": "s__Parvibaculum sp002480495", "ani": 99.977, "matched_fragments": 1163, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Parvibaculales;f__Parvibaculaceae;g__Parvibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.50", "min_intra_species_ani": "98.87", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 9, "status": "conclusive" }, { "accession": "GCA_002842875.1", "gtdb_species": "s__Parvibaculum sp002842875", "ani": 83.9494, "matched_fragments": 760, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Parvibaculales;f__Parvibaculaceae;g__Parvibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": 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"num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002694985.1", "gtdb_species": "s__Parvibaculum sp002694985", "ani": 83.5681, "matched_fragments": 810, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Parvibaculales;f__Parvibaculaceae;g__Parvibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000017565.1", "gtdb_species": "s__Parvibaculum lavamentivorans", "ani": 81.9459, "matched_fragments": 777, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Parvibaculales;f__Parvibaculaceae;g__Parvibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013823365.1", "gtdb_species": "s__Parvibaculum sp013823365", "ani": 81.786, "matched_fragments": 586, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Parvibaculales;f__Parvibaculaceae;g__Parvibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000314675.2", "gtdb_species": "s__Afipia broomeae", "ani": 76.3135, "matched_fragments": 134, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Afipia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.99", "min_intra_species_ani": "97.77", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_014635285.1", "gtdb_species": "s__Stappia taiwanensis", "ani": 76.2776, "matched_fragments": 134, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Stappia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003133345.1", "gtdb_species": "s__Pseudolabrys sp003133345", "ani": 75.9628, "matched_fragments": 92, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.45", "min_intra_species_ani": "96.45", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" } ] }