{ "tc_result": [ { "organism_name": "Candidatus Pelagibacter ubique", "strain": "strain=HTCC1062", "accession": "GCA_000012345.1", "taxid": 198252, "species_taxid": 198252, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5911, "matched_fragments": 86, "total_fragments": 240, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 89.58, "contamination": 0.52, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_012963775.1", "gtdb_species": "s__Pelagibacter sp012963775", "ani": 98.4859, "matched_fragments": 137, "total_fragments": 240, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.15", "min_intra_species_ani": "98.15", "mean_intra_species_af": "0.60", "min_intra_species_af": "0.60", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_902592985.1", 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"total_fragments": 240, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902560815.1", "gtdb_species": "s__Pelagibacter sp902560815", "ani": 78.3275, "matched_fragments": 112, "total_fragments": 240, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902569615.1", "gtdb_species": "s__Pelagibacter sp902569615", "ani": 78.3029, "matched_fragments": 94, "total_fragments": 240, 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.91", "min_intra_species_ani": "96.17", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.75", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_902577285.1", "gtdb_species": "s__Pelagibacter sp902577285", "ani": 77.4334, "matched_fragments": 57, "total_fragments": 240, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902546765.1", "gtdb_species": "s__Pelagibacter sp902546765", "ani": 77.3987, "matched_fragments": 66, "total_fragments": 240, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Pelagibacterales;f__Pelagibacteraceae;g__Pelagibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.47", "min_intra_species_ani": "97.47", "mean_intra_species_af": "0.71", "min_intra_species_af": "0.71", "num_clustered_genomes": 2, "status": "-" } ] }