{ "tc_result": [ { "organism_name": "Hoeflea olei", "strain": "strain=JC234", "accession": "GCA_001703635.1", "taxid": 1480615, "species_taxid": 1480615, "relation_to_type": "type", "validated": true, "ani": 80.7494, "matched_fragments": 581, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea marina", "strain": "strain=DSM 16791", "accession": "GCA_003182275.1", "taxid": 274592, "species_taxid": 274592, "relation_to_type": "type", "validated": true, "ani": 80.5889, "matched_fragments": 597, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 80.228, "matched_fragments": 526, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella fusca", "strain": "strain=DSM 21319", "accession": "GCA_014203155.1", "taxid": 544480, "species_taxid": 544480, "relation_to_type": "type", "validated": true, "ani": 79.8503, "matched_fragments": 500, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella yambaruensis", "strain": "strain=DSM 18801", "accession": "GCA_022899355.1", "taxid": 415996, "species_taxid": 415996, "relation_to_type": "type", "validated": true, "ani": 79.5802, "matched_fragments": 551, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=ATCC 19623", "accession": "GCA_020883495.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 79.5529, "matched_fragments": 466, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter selenitireducens", "strain": "strain=ATCC BAA-1503", "accession": "GCA_000518785.1", "taxid": 448181, "species_taxid": 448181, "relation_to_type": "type", "validated": true, "ani": 79.3703, "matched_fragments": 442, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea alexandrii", "strain": "strain=DSM 16655", "accession": "GCA_024105735.1", "taxid": 288436, "species_taxid": 288436, "relation_to_type": "type", "validated": true, "ani": 79.3388, "matched_fragments": 485, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium atlanticum", "strain": "strain=CNPSo 3140", "accession": "GCA_003289965.1", "taxid": 2233532, "species_taxid": 2233532, "relation_to_type": "type", "validated": true, "ani": 79.1358, "matched_fragments": 462, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor pacificus", "strain": "strain=pht-3B", "accession": "GCA_000300335.1", "taxid": 1231180, "species_taxid": 1231180, "relation_to_type": "type", "validated": true, "ani": 79.1091, "matched_fragments": 417, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium silamurunense", "strain": "strain=CCBAU 01550", "accession": "GCA_014843825.1", "taxid": 499528, "species_taxid": 499528, "relation_to_type": "type", "validated": true, "ani": 78.984, "matched_fragments": 438, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea halophila", "strain": "strain=KCTC 23107", "accession": "GCA_900220985.1", "taxid": 714899, "species_taxid": 714899, "relation_to_type": "type", "validated": true, "ani": 78.9546, "matched_fragments": 434, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium opportunistum", "strain": "strain=WSM2075", "accession": "GCA_000176035.2", "taxid": 593909, "species_taxid": 593909, "relation_to_type": "type", "validated": true, "ani": 78.9225, "matched_fragments": 449, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter ferrooxidans", "strain": "strain=F8825", "accession": "GCA_004137355.1", "taxid": 2509717, "species_taxid": 2509717, "relation_to_type": "type", "validated": true, "ani": 78.6725, "matched_fragments": 383, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea phototrophica", "strain": "strain=DFL-43", "accession": "GCA_000154705.2", "taxid": 244596, "species_taxid": 244596, "relation_to_type": "type", "validated": true, "ani": 78.5413, "matched_fragments": 387, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelativorans intermedius", "strain": "strain=LMG 28482", "accession": "GCA_025398255.1", "taxid": 515947, "species_taxid": 515947, "relation_to_type": "type", "validated": true, "ani": 78.1497, "matched_fragments": 333, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 85.94, "contamination": 5.59, "strain_heterogeneity": 33.33 }, "gtdb_result": [ { "accession": "GCF_000759435.1", "gtdb_species": "s__Hoeflea sp000759435", "ani": 81.0864, "matched_fragments": 591, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Hoeflea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001703635.1", "gtdb_species": "s__Hoeflea olei", "ani": 80.7525, "matched_fragments": 581, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Hoeflea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014359905.1", "gtdb_species": "s__Hoeflea sp014359905", "ani": 79.8956, "matched_fragments": 516, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Hoeflea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019084245.1", "gtdb_species": "s__Hoeflea sp019084245", "ani": 79.8821, "matched_fragments": 534, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Hoeflea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 6, 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"GCF_000518785.1", "gtdb_species": "s__Allorhizobium selenitireducens", "ani": 79.3703, "matched_fragments": 442, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Allorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902498795.1", "gtdb_species": "s__Hoeflea sp902498795", "ani": 79.3533, "matched_fragments": 494, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Hoeflea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.67", "min_intra_species_ani": "97.67", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_019091085.1", "gtdb_species": 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78.9443, "matched_fragments": 435, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Hoeflea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003590645.1", "gtdb_species": "s__Pseudaminobacter sp900116595", "ani": 78.8399, "matched_fragments": 395, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudaminobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.40", "min_intra_species_ani": "97.54", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003148805.1", "gtdb_species": "s__Aminobacter sp003148805", "ani": 78.7277, "matched_fragments": 405, 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aquamicrobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }