{ "tc_result": [ { "organism_name": "Phyllobacterium phragmitis", "strain": "strain=1N-3", "accession": "GCA_002980495.1", "taxid": 2670329, "species_taxid": 2670329, "relation_to_type": "type", "validated": true, "ani": 76.6149, "matched_fragments": 125, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium jaguaris", "strain": "strain=CCGE525", "accession": "GCA_003627755.1", "taxid": 1312183, "species_taxid": 1312183, "relation_to_type": "type", "validated": true, "ani": 76.5787, "matched_fragments": 126, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea alexandrii", "strain": "strain=DSM 16655", "accession": "GCA_024105735.1", "taxid": 288436, "species_taxid": 288436, "relation_to_type": "type", "validated": true, "ani": 76.4991, "matched_fragments": 186, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea halophila", "strain": "strain=KCTC 23107", "accession": "GCA_900220985.1", "taxid": 714899, "species_taxid": 714899, "relation_to_type": "type", "validated": true, "ani": 76.4924, "matched_fragments": 172, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella daejeonensis", "strain": "strain=JCM 16236", "accession": "GCA_024281235.1", "taxid": 659017, "species_taxid": 659017, "relation_to_type": "type", "validated": true, "ani": 76.4628, "matched_fragments": 120, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium changzhiense", "strain": "strain=WYCCWR 11279", "accession": "GCA_013087625.1", "taxid": 2692317, "species_taxid": 2692317, "relation_to_type": "type", "validated": true, "ani": 76.4584, "matched_fragments": 117, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=USDA 205", "accession": "GCA_001461695.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 76.4346, "matched_fragments": 143, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella kummerowiae", "strain": "strain=CCBAU 25048", "accession": "GCA_009827055.1", "taxid": 417745, "species_taxid": 417745, "relation_to_type": "type", "validated": true, "ani": 76.4233, "matched_fragments": 143, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium vallis", "strain": "strain=CCBAU 65647", "accession": "GCA_003985155.1", "taxid": 634290, "species_taxid": 634290, "relation_to_type": "type", "validated": true, "ani": 76.423, "matched_fragments": 124, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium rubi", "strain": "strain=NBRC 13261", "accession": "GCA_000739935.1", "taxid": 28099, "species_taxid": 28099, "relation_to_type": "type", "validated": true, "ani": 76.386, "matched_fragments": 100, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer sojae", "strain": "strain=CCBAU 05684", "accession": "GCA_000261485.1", "taxid": 716925, "species_taxid": 716925, "relation_to_type": "type", "validated": true, "ani": 76.3708, "matched_fragments": 124, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea phototrophica", "strain": "strain=DFL-43", "accession": "GCA_000154705.2", "taxid": 244596, "species_taxid": 244596, "relation_to_type": "type", "validated": true, "ani": 76.3687, "matched_fragments": 176, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium rubi", "strain": "strain=DSM 6772", "accession": "GCA_017873055.1", "taxid": 28099, "species_taxid": 28099, "relation_to_type": "type", "validated": true, "ani": 76.3643, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium bohemicum", "strain": "strain=R90", "accession": "GCA_002896715.1", "taxid": 2052828, "species_taxid": 2052828, "relation_to_type": "type", "validated": true, "ani": 76.3142, "matched_fragments": 93, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella haematophila", "strain": "strain=CCUG 38531", "accession": "GCA_005938105.1", "taxid": 419474, "species_taxid": 419474, "relation_to_type": "type", "validated": true, "ani": 76.2532, "matched_fragments": 118, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium pisi", "strain": "strain=DSM 30132", "accession": "GCA_003938655.1", "taxid": 574561, "species_taxid": 574561, "relation_to_type": "type", "validated": true, "ani": 76.2464, "matched_fragments": 128, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium sophorae", "strain": "strain=CCBAU 03386", "accession": "GCA_013087515.1", "taxid": 1535242, "species_taxid": 1535242, "relation_to_type": "type", "validated": true, "ani": 76.2404, "matched_fragments": 130, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sangaii", "strain": "strain=DSM 100039", "accession": "GCA_014207355.1", "taxid": 505389, "species_taxid": 505389, "relation_to_type": "type", "validated": true, "ani": 76.2359, "matched_fragments": 133, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium larrymoorei", "strain": "strain=CFBP5473", "accession": "GCA_005145045.1", "taxid": 160699, "species_taxid": 160699, "relation_to_type": "type", "validated": true, "ani": 76.2072, "matched_fragments": 112, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium larrymoorei", "strain": "strain=ATCC 51759", "accession": "GCA_000518585.1", "taxid": 160699, "species_taxid": 160699, "relation_to_type": "type", "validated": true, "ani": 76.2058, "matched_fragments": 112, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium japonicum", "strain": "strain=MAFF 303099", "accession": "GCA_000009625.1", "taxid": 2066070, "species_taxid": 2066070, "relation_to_type": "type", "validated": true, "ani": 76.1358, "matched_fragments": 145, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter lividus", "strain": "strain=DSM 25528", "accession": "GCA_003337715.1", "taxid": 1197950, "species_taxid": 1197950, "relation_to_type": "type", "validated": true, "ani": 76.1077, "matched_fragments": 106, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 76.1059, "matched_fragments": 141, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium metallidurans", "strain": "strain=STM 2683", "accession": "GCA_000350085.1", "taxid": 489722, "species_taxid": 489722, "relation_to_type": "type", "validated": true, "ani": 76.0374, "matched_fragments": 139, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 75.6182, "matched_fragments": 55, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 75.5913, "matched_fragments": 54, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium acaciae", "strain": "strain=10BB", "accession": "GCA_020889785.1", "taxid": 2683706, "species_taxid": 2683706, "relation_to_type": "type", "validated": true, "ani": 75.1897, "matched_fragments": 62, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004959855.1", "gtdb_species": "s__SPNT01 sp004959855", "ani": 77.0422, "matched_fragments": 351, "total_fragments": 1863, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__SPNT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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