{ "tc_result": [ { "organism_name": "Roseibium aggregatum", "strain": "strain=IAM 12614", "accession": "GCA_000168975.1", "taxid": 187304, "species_taxid": 187304, "relation_to_type": "suspected-type", "validated": true, "ani": 87.7368, "matched_fragments": 515, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium marinum", "strain": "strain=DSM 17023", "accession": "GCA_002906165.1", "taxid": 281252, "species_taxid": 281252, "relation_to_type": "type", "validated": true, "ani": 79.4678, "matched_fragments": 299, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium alexandrii", "strain": "strain=DFL-11", "accession": "GCA_000158095.2", "taxid": 388408, "species_taxid": 388408, "relation_to_type": "type", "validated": true, "ani": 78.4816, "matched_fragments": 162, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium album", "strain": "strain=CECT 5095", "accession": "GCA_001404515.1", "taxid": 311410, "species_taxid": 311410, "relation_to_type": "type", "validated": true, "ani": 78.4483, "matched_fragments": 212, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium suaedae", "strain": "strain=DSM 22153", "accession": "GCA_900142725.1", "taxid": 735517, "species_taxid": 735517, "relation_to_type": "type", "validated": true, "ani": 78.3231, "matched_fragments": 167, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium aestuarii", "strain": "strain=SYSU M00256-3", "accession": "GCA_008477545.1", "taxid": 2600299, "species_taxid": 2600299, "relation_to_type": "type", "validated": true, "ani": 78.2309, "matched_fragments": 158, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium denhamense", "strain": "strain=JCM 10543", "accession": "GCA_009711415.1", "taxid": 76305, "species_taxid": 76305, "relation_to_type": "type", "validated": true, "ani": 77.8662, "matched_fragments": 154, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium limicola", "strain": "strain=CAU 1637", "accession": "GCA_017313085.1", "taxid": 2816037, "species_taxid": 2816037, "relation_to_type": "type", "validated": true, "ani": 77.6735, "matched_fragments": 123, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibium polysiphoniae", "strain": "strain=KACC 19711", "accession": "GCA_014842925.1", "taxid": 2571221, "species_taxid": 2571221, "relation_to_type": "type", "validated": true, "ani": 77.5978, "matched_fragments": 113, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter indicus", "strain": "strain=DSM 23407", "accession": "GCA_001517385.1", "taxid": 466044, "species_taxid": 466044, "relation_to_type": "type", "validated": true, "ani": 77.506, "matched_fragments": 129, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter indicus", "strain": "strain=DSM 23407", "accession": "GCA_001418225.1", "taxid": 466044, "species_taxid": 466044, "relation_to_type": "type", "validated": true, "ani": 77.506, "matched_fragments": 129, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter phragmitetus", "strain": "strain=NCTC13350", "accession": "GCA_900454465.1", "taxid": 121719, "species_taxid": 121719, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4588, "matched_fragments": 137, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pannonibacter phragmitetus", "strain": "strain=DSM 14782", "accession": "GCA_000382365.1", "taxid": 121719, "species_taxid": 121719, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4127, "matched_fragments": 140, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stappia stellulata", "strain": "strain=DSM 5886", "accession": "GCA_000423705.1", "taxid": 71235, "species_taxid": 71235, "relation_to_type": "type", "validated": true, "ani": 76.7377, "matched_fragments": 96, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.91, "contamination": 4.55, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001999245.1", "gtdb_species": "s__Roseibium aggregatum_A", "ani": 98.2319, "matched_fragments": 592, "total_fragments": 599, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Roseibium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.61", "min_intra_species_ani": "96.85", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 16, "status": "conclusive" }, { "accession": "GCF_000168975.1", "gtdb_species": "s__Roseibium aggregatum", "ani": 87.758, "matched_fragments": 514, "total_fragments": 599, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Roseibium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008107695.1", "gtdb_species": "s__Roseibium sp008107695", "ani": 86.1729, "matched_fragments": 486, "total_fragments": 599, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Roseibium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002237595.1", "gtdb_species": "s__Roseibium sp002237595", "ani": 80.3206, "matched_fragments": 335, "total_fragments": 599, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Roseibium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003075075.1", "gtdb_species": "s__Roseibium sp003075075", "ani": 79.7625, "matched_fragments": 275, "total_fragments": 599, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Roseibium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_008107755.1", "gtdb_species": "s__Roseibium sp008107755", "ani": 79.6443, "matched_fragments": 267, "total_fragments": 599, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Roseibium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002906165.1", "gtdb_species": "s__Roseibium marinum", "ani": 79.4678, "matched_fragments": 299, "total_fragments": 599, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Roseibium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017309185.1", "gtdb_species": "s__Roseibium aggregatum_B", "ani": 79.4001, "matched_fragments": 276, "total_fragments": 599, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Roseibium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001624695.1", "gtdb_species": "s__Roseibium sp001624695", "ani": 79.2739, "matched_fragments": 276, "total_fragments": 599, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Roseibium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017643925.1", "gtdb_species": "s__Roseibium sp017643925", "ani": 78.9671, "matched_fragments": 219, "total_fragments": 599, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Roseibium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000158095.2", "gtdb_species": "s__Roseibium alexandrii", "ani": 78.4816, "matched_fragments": 162, "total_fragments": 599, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Roseibium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.43", "min_intra_species_ani": "97.43", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000521215.1", "gtdb_species": "s__Roseibium sp000521215", "ani": 78.047, "matched_fragments": 213, "total_fragments": 599, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Stappiaceae;g__Roseibium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }