{ "tc_result": [ { "organism_name": "Bradyrhizobium nitroreducens", "strain": "strain=TSA1", "accession": "GCA_002776695.1", "taxid": 709803, "species_taxid": 709803, "relation_to_type": "type", "validated": true, "ani": 77.6562, "matched_fragments": 197, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopseudomonas rhenobacensis", "strain": "strain=DSM 12706", "accession": "GCA_014203125.1", "taxid": 87461, "species_taxid": 87461, "relation_to_type": "type", "validated": true, "ani": 77.6016, "matched_fragments": 203, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium sediminis", "strain": "strain=S2-20-1", "accession": "GCA_018736085.1", "taxid": 2840469, "species_taxid": 2840469, "relation_to_type": "type", "validated": true, "ani": 77.5719, "matched_fragments": 205, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium frederickii", "strain": "strain=CNPSo 3426", "accession": "GCA_004570865.1", "taxid": 2560054, "species_taxid": 2560054, "relation_to_type": "type", "validated": true, "ani": 77.5303, "matched_fragments": 203, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoplanes sinuspersici", "strain": "strain=CECT 8374", "accession": "GCA_003610435.1", "taxid": 1235591, "species_taxid": 1235591, "relation_to_type": "type", "validated": true, "ani": 77.4669, "matched_fragments": 200, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afipia broomeae", "strain": "strain=ATCC 49717", "accession": "GCA_000314675.2", "taxid": 56946, "species_taxid": 56946, "relation_to_type": "type", "validated": true, "ani": 77.4626, "matched_fragments": 159, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoplanes sinuspersici", "strain": "strain=RIPI110", "accession": "GCA_002119765.1", "taxid": 1235591, "species_taxid": 1235591, "relation_to_type": "type", "validated": true, "ani": 77.453, "matched_fragments": 202, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium valentinum", "strain": "strain=LmjM3", "accession": "GCA_001440405.1", "taxid": 1518501, "species_taxid": 1518501, "relation_to_type": "type", "validated": true, "ani": 77.3965, "matched_fragments": 188, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=USDA 76", "accession": "GCA_000379145.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 77.3349, "matched_fragments": 208, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=USDA 76", "accession": "GCA_023278185.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 77.3321, "matched_fragments": 206, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oligotrophicum", "strain": "strain=S58", "accession": "GCA_000344805.1", "taxid": 44255, "species_taxid": 44255, "relation_to_type": "type", "validated": true, "ani": 77.325, "matched_fragments": 192, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cenepequi", "strain": "strain=CNPSo 4026", "accession": "GCA_020329485.1", "taxid": 2821403, "species_taxid": 2821403, "relation_to_type": "type", "validated": true, "ani": 77.305, "matched_fragments": 176, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium quebecense", "strain": "strain=66S1MB, /ecotype=symbiovar septentrionalis", "accession": "GCA_013373795.3", "taxid": 2748629, "species_taxid": 2748629, "relation_to_type": "type", "validated": true, "ani": 77.286, "matched_fragments": 195, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium icense", "strain": "strain=LMTR 13", "accession": "GCA_001693385.1", "taxid": 1274631, "species_taxid": 1274631, "relation_to_type": "type", "validated": true, "ani": 77.2749, "matched_fragments": 179, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=NBRC 14791", "accession": "GCA_006539665.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 77.2694, "matched_fragments": 207, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium altum", "strain": "strain=Pear77", "accession": "GCA_020889705.1", "taxid": 1571202, "species_taxid": 1571202, "relation_to_type": "type", "validated": true, "ani": 77.253, "matched_fragments": 193, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cosmicum", "strain": "strain=58S1", "accession": "GCA_007290395.1", "taxid": 1404864, "species_taxid": 1404864, "relation_to_type": "type", "validated": true, "ani": 77.2065, "matched_fragments": 207, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium pachyrhizi", "strain": "strain=PAC 48", "accession": "GCA_001189245.1", "taxid": 280333, "species_taxid": 280333, "relation_to_type": "type", "validated": true, "ani": 77.1029, "matched_fragments": 215, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium niftali", "strain": "strain=CNPSo 3448", "accession": "GCA_004571025.1", "taxid": 2560055, "species_taxid": 2560055, "relation_to_type": "type", "validated": true, "ani": 77.0883, "matched_fragments": 214, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes piscinae", "strain": "strain=DSM 19946", "accession": "GCA_003258855.1", "taxid": 444923, "species_taxid": 444923, "relation_to_type": "type", "validated": true, "ani": 76.9335, "matched_fragments": 161, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes roseus", "strain": "strain=DSM 5909", "accession": "GCA_003258865.1", "taxid": 29409, "species_taxid": 29409, "relation_to_type": "type", "validated": true, "ani": 76.8, "matched_fragments": 188, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium bullatum", "strain": "strain=DSM 21893", "accession": "GCA_022179105.1", "taxid": 570505, "species_taxid": 570505, "relation_to_type": "type", "validated": true, "ani": 76.4677, "matched_fragments": 69, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 76.3075, "matched_fragments": 103, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium populisoli", "strain": "strain=XQZ8", "accession": "GCA_019430945.1", "taxid": 2859785, "species_taxid": 2859785, "relation_to_type": "type", "validated": true, "ani": 76.1219, "matched_fragments": 76, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium mesophilicum", "strain": "strain=NBRC 15688", "accession": "GCA_022179445.1", "taxid": 39956, "species_taxid": 39956, "relation_to_type": "type", "validated": true, "ani": 76.0593, "matched_fragments": 90, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium haplocladii", "strain": "strain=DSM 24195", "accession": "GCA_022179265.1", "taxid": 1176176, "species_taxid": 1176176, "relation_to_type": "type", "validated": true, "ani": 76.0244, "matched_fragments": 89, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oricola indica", "strain": "strain=JL-62", "accession": "GCA_019966595.1", "taxid": 2872591, "species_taxid": 2872591, "relation_to_type": "type", "validated": true, "ani": 75.8213, "matched_fragments": 67, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 71.58, "contamination": 6.77, "strain_heterogeneity": 66.67 }, "gtdb_result": [ { "accession": "GCA_903839845.1", "gtdb_species": "s__Pseudolabrys sp903839845", "ani": 81.6195, "matched_fragments": 454, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.70", "min_intra_species_ani": "99.58", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 17, "status": "-" }, { "accession": "GCA_001464835.1", "gtdb_species": "s__Pseudolabrys sp001464835", "ani": 81.5309, "matched_fragments": 425, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903892675.1", "gtdb_species": "s__Pseudolabrys sp903892675", "ani": 80.8608, "matched_fragments": 393, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016124795.1", "gtdb_species": "s__Pseudolabrys sp016124795", "ani": 80.8413, "matched_fragments": 447, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903878085.1", "gtdb_species": "s__Pseudolabrys sp903878085", "ani": 80.2475, "matched_fragments": 414, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903885555.1", "gtdb_species": "s__Pseudolabrys sp903885555", "ani": 79.958, "matched_fragments": 384, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.81", "min_intra_species_ani": "99.81", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018240595.1", "gtdb_species": "s__Pseudolabrys sp018240595", "ani": 79.8552, "matched_fragments": 386, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003367195.1", "gtdb_species": "s__Pseudolabrys sp003367195", "ani": 79.8316, "matched_fragments": 364, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018242205.1", "gtdb_species": "s__Pseudolabrys sp018242205", "ani": 79.7915, "matched_fragments": 366, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017849615.1", "gtdb_species": "s__Pseudolabrys sp017849615", "ani": 79.7443, "matched_fragments": 376, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001426945.1", "gtdb_species": "s__Pseudolabrys sp001426945", "ani": 79.6725, "matched_fragments": 378, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005153485.1", "gtdb_species": "s__Pseudolabrys sp005153485", "ani": 79.6587, "matched_fragments": 386, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903891395.1", "gtdb_species": "s__Pseudolabrys sp903891395", "ani": 78.7541, "matched_fragments": 265, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }