{ "tc_result": [ { "organism_name": "Protaetiibacter intestinalis", "strain": "strain=2DFWR-13", "accession": "GCA_003627075.1", "taxid": 2419774, "species_taxid": 2419774, "relation_to_type": "type", "validated": true, "ani": 81.1357, "matched_fragments": 433, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Protaetiibacter larvae", "strain": "strain=KACC 19322", "accession": "GCA_008365275.1", "taxid": 2592654, "species_taxid": 2592654, "relation_to_type": "type", "validated": true, "ani": 80.7584, "matched_fragments": 405, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseoglobus frigidaquae", "strain": "strain=DSM 23889", "accession": "GCA_009664385.2", "taxid": 424758, "species_taxid": 424758, "relation_to_type": "type", "validated": true, "ani": 80.0236, "matched_fragments": 374, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseoglobus frigidaquae", "strain": "strain=DSM 23889", "accession": "GCA_014200395.1", "taxid": 424758, "species_taxid": 424758, "relation_to_type": "type", "validated": true, "ani": 79.993, "matched_fragments": 378, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces allii", "strain": "strain=JCM 13584", "accession": "GCA_009749385.1", "taxid": 393607, "species_taxid": 393607, "relation_to_type": "type", "validated": true, "ani": 79.2311, "matched_fragments": 377, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mariniharenae", "strain": "strain=NEAU-184", "accession": "GCA_008122505.1", "taxid": 2604423, "species_taxid": 2604423, "relation_to_type": "type", "validated": true, "ani": 79.1237, "matched_fragments": 396, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces hippuratus", "strain": "strain=DSM 8598", "accession": "GCA_013410355.1", "taxid": 286438, "species_taxid": 286438, "relation_to_type": "type", "validated": true, "ani": 79.0952, "matched_fragments": 365, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbiconiux solani", "strain": "strain=NBRC 106740", "accession": "GCA_001571005.1", "taxid": 661329, "species_taxid": 661329, "relation_to_type": "type", "validated": true, "ani": 79.058, "matched_fragments": 353, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Galbitalea soli", "strain": "strain=NBRC 108727", "accession": "GCA_010686725.1", "taxid": 1268042, "species_taxid": 1268042, "relation_to_type": "type", "validated": true, "ani": 79.0535, "matched_fragments": 349, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conyzicola lurida", "strain": "strain=DSM 105784", "accession": "GCA_014204935.1", "taxid": 1172621, "species_taxid": 1172621, "relation_to_type": "type", "validated": true, "ani": 79.0501, "matched_fragments": 378, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Galbitalea soli", "strain": "strain=DSM 105515", "accession": "GCA_013410525.1", "taxid": 1268042, "species_taxid": 1268042, "relation_to_type": "type", "validated": true, "ani": 78.9946, "matched_fragments": 354, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. insidiosus", "strain": "strain=LMG 3663", "accession": "GCA_002240565.1", "taxid": 33014, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 78.9415, "matched_fragments": 312, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. insidiosus", "strain": "strain=CFBP 2404", "accession": "GCA_003693415.1", "taxid": 33014, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 78.9067, "matched_fragments": 313, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigoribacterium faeni", "strain": "strain=DSM 10309", "accession": "GCA_014137965.1", "taxid": 145483, "species_taxid": 145483, "relation_to_type": "type", "validated": true, "ani": 78.901, "matched_fragments": 338, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigoribacterium faeni", "strain": "strain=NBRC 103066", "accession": "GCA_007988805.1", "taxid": 145483, "species_taxid": 145483, "relation_to_type": "type", "validated": true, "ani": 78.8807, "matched_fragments": 329, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. insidiosus", "strain": "strain=ATCC 10253", "accession": "GCA_003076355.1", "taxid": 33014, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 78.8332, "matched_fragments": 316, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter phaseoli", "strain": "strain=LPPA 982", "accession": "GCA_021922925.1", "taxid": 1734031, "species_taxid": 1734031, "relation_to_type": "type", "validated": true, "ani": 78.7928, "matched_fragments": 341, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. tessellarius", "strain": "strain=ATCC 33566", "accession": "GCA_002240635.1", "taxid": 31965, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 78.7924, "matched_fragments": 327, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis", "strain": "strain=LMG7333", "accession": "GCA_021216655.1", "taxid": 28447, "species_taxid": 28447, "relation_to_type": "suspected-type", "validated": true, "ani": 78.735, "matched_fragments": 340, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. tessellarius", "strain": "strain=ATCC 33566", "accession": "GCA_021922985.1", "taxid": 31965, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 78.6956, "matched_fragments": 340, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marisediminicola senii", "strain": "strain=SM7_A14", "accession": "GCA_011057645.1", "taxid": 2711233, "species_taxid": 2711233, "relation_to_type": "type", "validated": true, "ani": 78.6769, "matched_fragments": 325, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium flavescens", "strain": "strain=JCM 3877", "accession": "GCA_018588945.1", "taxid": 69366, "species_taxid": 69366, "relation_to_type": "type", "validated": true, "ani": 78.6336, "matched_fragments": 315, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrococcus pavilionensis", "strain": "strain=RW1", "accession": "GCA_000400485.1", "taxid": 1346502, "species_taxid": 1346502, "relation_to_type": "type", "validated": true, "ani": 78.5399, "matched_fragments": 316, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium testaceum", "strain": "strain=NBRC 12675", "accession": "GCA_006539145.1", "taxid": 2033, "species_taxid": 2033, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4911, "matched_fragments": 265, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium hatanonis", "strain": "strain=JCM14558", "accession": "GCA_008017415.1", "taxid": 404366, "species_taxid": 404366, "relation_to_type": "type", "validated": true, "ani": 78.4622, "matched_fragments": 285, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium humi", "strain": "strain=DSM 21799", "accession": "GCA_900105715.1", "taxid": 640635, "species_taxid": 640635, "relation_to_type": "type", "validated": true, "ani": 78.3573, "matched_fragments": 286, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrococcus jenensis", "strain": "strain=DSM 9580", "accession": "GCA_003752465.1", "taxid": 46353, "species_taxid": 46353, "relation_to_type": "type", "validated": true, "ani": 78.1824, "matched_fragments": 339, "total_fragments": 796, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.07, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002325245.1", "gtdb_species": "s__Pseudolysinimonas sp002325245", "ani": 99.9625, "matched_fragments": 771, "total_fragments": 796, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Pseudolysinimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.78", "min_intra_species_ani": "99.17", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.89", "num_clustered_genomes": 14, "status": "conclusive" }, { "accession": "GCA_905479755.1", "gtdb_species": "s__Pseudolysinimonas sp905479755", "ani": 88.0943, "matched_fragments": 635, "total_fragments": 796, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Pseudolysinimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003627075.1", "gtdb_species": "s__Protaetiibacter intestinalis", "ani": 81.1421, "matched_fragments": 433, "total_fragments": 796, "gtdb_taxonomy": 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"d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Protaetiibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017308515.1", "gtdb_species": "s__Pseudolysinimonas sp017308515", "ani": 80.7004, "matched_fragments": 465, "total_fragments": 796, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Pseudolysinimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006517535.1", "gtdb_species": "s__Schumannella sp006517535", "ani": 80.6539, "matched_fragments": 432, "total_fragments": 796, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Schumannella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014483895.1", "gtdb_species": "s__Protaetiibacter sp014483895", "ani": 80.6426, "matched_fragments": 435, "total_fragments": 796, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Protaetiibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004216815.1", "gtdb_species": "s__Protaetiibacter sp004216815", "ani": 80.5485, "matched_fragments": 429, "total_fragments": 796, "gtdb_taxonomy": 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"d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Protaetiibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_006517435.1", "gtdb_species": "s__Schumannella sp006517435", "ani": 80.4882, "matched_fragments": 429, "total_fragments": 796, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Schumannella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003243275.1", "gtdb_species": "s__Protaetiibacter sp003243275", "ani": 80.4697, "matched_fragments": 411, "total_fragments": 796, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Protaetiibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011751865.2", "gtdb_species": "s__Protaetiibacter sp011751905", "ani": 80.3183, "matched_fragments": 379, "total_fragments": 796, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Protaetiibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.78", "min_intra_species_ani": "98.78", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014653215.1", "gtdb_species": "s__Pseudolysinimonas yzui", "ani": 80.2729, "matched_fragments": 434, "total_fragments": 796, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Pseudolysinimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005502445.1", "gtdb_species": "s__Yonghaparkia sp005502445", "ani": 79.7535, "matched_fragments": 337, "total_fragments": 796, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Yonghaparkia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002797715.1", "gtdb_species": "s__Diaminobutyricimonas aerilata", "ani": 79.7295, "matched_fragments": 401, "total_fragments": 796, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Diaminobutyricimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003576405.1", "gtdb_species": "s__Clavibacter sp003576405", "ani": 78.9643, "matched_fragments": 302, "total_fragments": 796, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Clavibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.88", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011057645.1", "gtdb_species": "s__Marisediminicola senii", "ani": 78.6764, "matched_fragments": 325, "total_fragments": 796, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Marisediminicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }