{ "tc_result": [ { "organism_name": "Rhodococcus yunnanensis", "strain": "strain=NBRC 103083", "accession": "GCA_001895005.1", "taxid": 278209, "species_taxid": 278209, "relation_to_type": "type", "validated": true, "ani": 80.289, "matched_fragments": 802, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus kyotonensis", "strain": "strain=JCM 23211", "accession": "GCA_900188125.1", "taxid": 398843, "species_taxid": 398843, "relation_to_type": "type", "validated": true, "ani": 80.2, "matched_fragments": 791, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus fascians", "strain": "strain=LMG 3623", "accession": "GCA_000761055.1", "taxid": 1828, "species_taxid": 1828, "relation_to_type": "type", "validated": true, "ani": 80.0349, "matched_fragments": 685, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus fascians", "strain": "strain=NBRC 12155", "accession": "GCA_001894785.1", "taxid": 1828, "species_taxid": 1828, "relation_to_type": "type", "validated": true, "ani": 79.9804, "matched_fragments": 681, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus pseudokoreensis", "strain": "strain=R79", "accession": "GCA_017068395.1", "taxid": 2811421, "species_taxid": 2811421, "relation_to_type": "type", "validated": true, "ani": 78.3498, "matched_fragments": 518, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prescottella defluvii", "strain": "strain=Ca11", "accession": "GCA_000738775.1", "taxid": 1323361, "species_taxid": 1323361, "relation_to_type": "type", "validated": true, "ani": 78.2937, "matched_fragments": 424, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus wratislaviensis", "strain": "strain=NBRC 100605", "accession": "GCA_000583735.1", "taxid": 44752, "species_taxid": 44752, "relation_to_type": "suspected-type", "validated": true, "ani": 78.215, "matched_fragments": 503, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus spelaei", "strain": "strain=C9-5", "accession": "GCA_006704125.1", "taxid": 2546320, "species_taxid": 2546320, "relation_to_type": "type", "validated": true, "ani": 78.1585, "matched_fragments": 445, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus opacus", "strain": "strain=DSM 43205", "accession": "GCA_001646735.1", "taxid": 37919, "species_taxid": 37919, "relation_to_type": "type", "validated": true, "ani": 78.1255, "matched_fragments": 503, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prescottella equi", "strain": "strain=DSM 20307", "accession": "GCA_002094305.1", "taxid": 43767, "species_taxid": 43767, "relation_to_type": "type", "validated": true, "ani": 78.112, "matched_fragments": 428, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prescottella equi", "strain": "strain=NCTC1621", "accession": "GCA_900455845.1", "taxid": 43767, "species_taxid": 43767, "relation_to_type": "type", "validated": true, "ani": 78.1031, "matched_fragments": 438, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodococcus opacus", "strain": "strain=ATCC 51881", "accession": "GCA_012396235.1", "taxid": 37919, "species_taxid": 37919, "relation_to_type": "type", "validated": true, "ani": 78.1016, "matched_fragments": 498, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prescottella equi", "strain": "strain=NBRC 101255", "accession": "GCA_001552575.1", "taxid": 43767, "species_taxid": 43767, "relation_to_type": "type", "validated": true, "ani": 78.093, "matched_fragments": 432, "total_fragments": 1641, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017168235.1", "gtdb_species": "s__Rhodococcus_B sp001942265", "ani": 98.3567, "matched_fragments": 1488, "total_fragments": 1641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.66", "min_intra_species_ani": "98.66", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_001647195.1", "gtdb_species": "s__Rhodococcus_B sp001647195", "ani": 80.9609, "matched_fragments": 812, "total_fragments": 1641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002259415.1", "gtdb_species": "s__Rhodococcus_B sp002259415", "ani": 80.7213, "matched_fragments": 797, "total_fragments": 1641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.80", "min_intra_species_ani": "98.78", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000760735.1", "gtdb_species": "s__Rhodococcus_B fascians_E", "ani": 80.5558, "matched_fragments": 811, "total_fragments": 1641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_B", "ani_circumscription_radius": 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"N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001895005.1", "gtdb_species": "s__Rhodococcus_B yunnanensis", "ani": 80.3035, "matched_fragments": 800, "total_fragments": 1641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900188125.1", "gtdb_species": "s__Rhodococcus_B kyotonensis", "ani": 80.2192, "matched_fragments": 787, "total_fragments": 1641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": 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"0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCF_002258315.1", "gtdb_species": "s__Rhodococcus_B sp002258315", "ani": 79.9629, "matched_fragments": 732, "total_fragments": 1641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001894785.1", "gtdb_species": "s__Rhodococcus_B fascians", "ani": 79.9476, "matched_fragments": 686, "total_fragments": 1641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.73", "min_intra_species_ani": "95.09", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.82", "num_clustered_genomes": 43, "status": "-" }, { "accession": "GCF_002259405.1", "gtdb_species": "s__Rhodococcus_B sp002259405", "ani": 79.8504, "matched_fragments": 705, "total_fragments": 1641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.26", "min_intra_species_ani": "98.16", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000760935.2", "gtdb_species": "s__Rhodococcus_B sp002259335", "ani": 79.685, "matched_fragments": 699, "total_fragments": 1641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.52", "min_intra_species_ani": "96.34", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_004795915.1", "gtdb_species": "s__Rhodococcus_B sp004795915", "ani": 79.2849, "matched_fragments": 657, "total_fragments": 1641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }