{ "tc_result": [ { "organism_name": "Pacificimonas flava", "strain": "strain=JLT2015", "accession": "GCA_000342165.1", "taxid": 1234595, "species_taxid": 1234595, "relation_to_type": "type", "validated": true, "ani": 77.9583, "matched_fragments": 245, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pacificimonas flava", "strain": "strain=DSM 107612", "accession": "GCA_014202205.1", "taxid": 1234595, "species_taxid": 1234595, "relation_to_type": "type", "validated": true, "ani": 77.9537, "matched_fragments": 244, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis fribergensis", "strain": "strain=Kp5.2", "accession": "GCA_000803645.1", "taxid": 1515612, "species_taxid": 1515612, "relation_to_type": "type", "validated": true, "ani": 77.0073, "matched_fragments": 117, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium yanoikuyae", "strain": "strain=ATCC 51230", "accession": "GCA_000315525.1", "taxid": 13690, "species_taxid": 13690, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0026, "matched_fragments": 128, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium fluviale", "strain": "strain=CHR27", "accession": "GCA_004122115.1", "taxid": 2506423, "species_taxid": 2506423, "relation_to_type": "type", "validated": true, "ani": 76.9927, "matched_fragments": 72, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter litoralis", "strain": "strain=DSM 8509", "accession": "GCA_001719165.1", "taxid": 39960, "species_taxid": 39960, "relation_to_type": "type", "validated": true, "ani": 76.9264, "matched_fragments": 85, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter litoralis", "strain": "strain=DSM 8509", "accession": "GCA_000714795.1", "taxid": 39960, "species_taxid": 39960, "relation_to_type": "type", "validated": true, "ani": 76.9221, "matched_fragments": 86, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas desiccabilis", "strain": "strain=CP1D", "accession": "GCA_004135605.1", "taxid": 429134, "species_taxid": 429134, "relation_to_type": "type", "validated": true, "ani": 76.8756, "matched_fragments": 100, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas sanxanigenens", "strain": "strain=NX02", "accession": "GCA_000512205.2", "taxid": 397260, "species_taxid": 397260, "relation_to_type": "type", "validated": true, "ani": 76.8583, "matched_fragments": 143, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas desiccabilis", "strain": "strain=DSM 16792", "accession": "GCA_014196135.1", "taxid": 429134, "species_taxid": 429134, "relation_to_type": "type", "validated": true, "ani": 76.8512, "matched_fragments": 101, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tardibacter chloracetimidivorans", "strain": "strain=JJ-A5", "accession": "GCA_001890385.1", "taxid": 1921510, "species_taxid": 1921510, "relation_to_type": "type", "validated": true, "ani": 76.8321, "matched_fragments": 88, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas formosensis", "strain": "strain=CC-Nfb-2", "accession": "GCA_009755815.1", "taxid": 861534, "species_taxid": 861534, "relation_to_type": "type", "validated": true, "ani": 76.7295, "matched_fragments": 127, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinithalassobacter tenebrarum", "strain": "strain=zrk23", "accession": "GCA_011057975.1", "taxid": 2711215, "species_taxid": 2711215, "relation_to_type": "type", "validated": true, "ani": 76.7008, "matched_fragments": 121, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas japonica", "strain": "strain=DSM 22753", "accession": "GCA_011762085.1", "taxid": 511662, "species_taxid": 511662, "relation_to_type": "type", "validated": true, "ani": 76.6947, "matched_fragments": 103, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium ummariense", "strain": "strain=RL-3", "accession": "GCA_000447205.1", "taxid": 420994, "species_taxid": 420994, "relation_to_type": "type", "validated": true, "ani": 76.6713, "matched_fragments": 114, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas colocasiae", "strain": "strain=JCM 31229", "accession": "GCA_019880585.1", "taxid": 1848973, "species_taxid": 1848973, "relation_to_type": "type", "validated": true, "ani": 76.5995, "matched_fragments": 151, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizorhabdus phycosphaerae", "strain": "strain=MK52", "accession": "GCA_011044255.1", "taxid": 2711156, "species_taxid": 2711156, "relation_to_type": "type", "validated": true, "ani": 76.5748, "matched_fragments": 131, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas suaedae", "strain": "strain=XS-10", "accession": "GCA_007833215.1", "taxid": 2599297, "species_taxid": 2599297, "relation_to_type": "type", "validated": true, "ani": 76.55, "matched_fragments": 99, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas parva", "strain": "strain=17J27-24", "accession": "GCA_004564275.1", "taxid": 2555898, "species_taxid": 2555898, "relation_to_type": "type", "validated": true, "ani": 76.5218, "matched_fragments": 96, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas flavalba", "strain": "strain=ZLT-5", "accession": "GCA_004796535.1", "taxid": 2559804, "species_taxid": 2559804, "relation_to_type": "type", "validated": true, "ani": 76.4772, "matched_fragments": 118, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas chungangi", "strain": "strain=CGMCC 1.13654", "accession": "GCA_013778325.1", "taxid": 2683589, "species_taxid": 2683589, "relation_to_type": "type", "validated": true, "ani": 76.427, "matched_fragments": 106, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas segetis", "strain": "strain=YJ09", "accession": "GCA_009720245.1", "taxid": 1104779, "species_taxid": 1104779, "relation_to_type": "type", "validated": true, "ani": 76.3841, "matched_fragments": 68, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas prati", "strain": "strain=DSM 103336", "accession": "GCA_014199405.1", "taxid": 1843237, "species_taxid": 1843237, "relation_to_type": "type", "validated": true, "ani": 76.3558, "matched_fragments": 95, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas citricola", "strain": "strain=RHCKR47", "accession": "GCA_019429535.1", "taxid": 2862498, "species_taxid": 2862498, "relation_to_type": "type", "validated": true, "ani": 76.3097, "matched_fragments": 79, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia adipata", "strain": "strain=DSM 17808", "accession": "GCA_000423225.1", "taxid": 166954, "species_taxid": 166954, "relation_to_type": "type", "validated": true, "ani": 76.2349, "matched_fragments": 58, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium acidiphilum", "strain": "strain=DSM 19966", "accession": "GCA_000429005.1", "taxid": 505248, "species_taxid": 505248, "relation_to_type": "type", "validated": true, "ani": 76.1439, "matched_fragments": 81, "total_fragments": 857, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002375465.1", "gtdb_species": "s__Pacificimonas sp002375465", "ani": 99.9869, "matched_fragments": 854, "total_fragments": 857, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Pacificimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_019204005.1", "gtdb_species": "s__Pacificimonas sp019204005", "ani": 78.26, "matched_fragments": 282, "total_fragments": 857, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Pacificimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000342165.1", "gtdb_species": "s__Pacificimonas flava", "ani": 77.9592, "matched_fragments": 245, "total_fragments": 857, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Pacificimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002211145.1", "gtdb_species": "s__Pacificimonas flava_A", "ani": 77.6429, "matched_fragments": 198, "total_fragments": 857, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423225.1", "gtdb_species": "s__Kaistia adipata", "ani": 76.2075, "matched_fragments": 59, "total_fragments": 857, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Kaistiaceae;g__Kaistia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000429005.1", "gtdb_species": "s__Novosphingobium acidiphilum", "ani": 76.1439, "matched_fragments": 81, "total_fragments": 857, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.82", "min_intra_species_ani": "98.58", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.82", "num_clustered_genomes": 13, "status": "-" } ] }