{ "tc_result": [ { "organism_name": "Sphingomonas suaedae", "strain": "strain=XS-10", "accession": "GCA_007833215.1", "taxid": 2599297, "species_taxid": 2599297, "relation_to_type": "type", "validated": true, "ani": 84.7448, "matched_fragments": 653, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas koreensis", "strain": "strain=JSS26", "accession": "GCA_002797435.1", "taxid": 93064, "species_taxid": 93064, "relation_to_type": "type", "validated": true, "ani": 82.5199, "matched_fragments": 555, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas koreensis", "strain": "strain=KCTC 2882", "accession": "GCA_003953035.1", "taxid": 93064, "species_taxid": 93064, "relation_to_type": "type", "validated": true, "ani": 82.4982, "matched_fragments": 558, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas koreensis", "strain": "strain=NBRC 16723", "accession": "GCA_001598395.1", "taxid": 93064, "species_taxid": 93064, "relation_to_type": "type", "validated": true, "ani": 82.4359, "matched_fragments": 557, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas turrisvirgatae", "strain": "strain=MCT13", "accession": "GCA_001721295.1", "taxid": 1888892, "species_taxid": 1888892, "relation_to_type": "type", "validated": true, "ani": 81.5716, "matched_fragments": 504, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hengshuiensis", "strain": "strain=WHSC-8", "accession": "GCA_000935025.1", "taxid": 1609977, "species_taxid": 1609977, "relation_to_type": "type", "validated": true, "ani": 79.7244, "matched_fragments": 446, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas naasensis", "strain": "strain=DSM 100060", "accession": "GCA_011762145.1", "taxid": 1344951, "species_taxid": 1344951, "relation_to_type": "type", "validated": true, "ani": 79.659, "matched_fragments": 449, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas naasensis", "strain": "strain=KIS18-15", "accession": "GCA_004792695.1", "taxid": 1344951, "species_taxid": 1344951, "relation_to_type": "type", "validated": true, "ani": 79.6299, "matched_fragments": 443, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas soli", "strain": "strain=NBRC 100801", "accession": "GCA_001591025.1", "taxid": 266127, "species_taxid": 266127, "relation_to_type": "type", "validated": true, "ani": 79.2162, "matched_fragments": 386, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas azotifigens", "strain": "strain=NBRC 15497", "accession": "GCA_002091475.1", "taxid": 330920, "species_taxid": 330920, "relation_to_type": "type", "validated": true, "ani": 79.1903, "matched_fragments": 403, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas panni", "strain": "strain=DSM 15761", "accession": "GCA_022664435.1", "taxid": 237612, "species_taxid": 237612, "relation_to_type": "type", "validated": true, "ani": 79.1795, "matched_fragments": 362, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas japonica", "strain": "strain=DSM 22753", "accession": "GCA_011762085.1", "taxid": 511662, "species_taxid": 511662, "relation_to_type": "type", "validated": true, "ani": 79.1722, "matched_fragments": 356, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas trueperi", "strain": "strain=DSM 7225", "accession": "GCA_011927635.1", "taxid": 53317, "species_taxid": 53317, "relation_to_type": "type", "validated": true, "ani": 79.124, "matched_fragments": 418, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas psychrotolerans", "strain": "strain=Cra20", "accession": "GCA_002796605.1", "taxid": 1327635, "species_taxid": 1327635, "relation_to_type": "type", "validated": true, "ani": 79.0388, "matched_fragments": 407, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hankookensis", "strain": "strain=KCTC 22579", "accession": "GCA_022664465.1", "taxid": 563996, "species_taxid": 563996, "relation_to_type": "type", "validated": true, "ani": 78.8814, "matched_fragments": 370, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas baiyangensis", "strain": "strain=L-1-4 w-11", "accession": "GCA_005144715.1", "taxid": 2572576, "species_taxid": 2572576, "relation_to_type": "type", "validated": true, "ani": 78.877, "matched_fragments": 368, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas yabuuchiae", "strain": "strain=DSM 14562", "accession": "GCA_017052455.1", "taxid": 172044, "species_taxid": 172044, "relation_to_type": "type", "validated": true, "ani": 78.8667, "matched_fragments": 322, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas alpina", "strain": "strain=DSM 22537", "accession": "GCA_025370095.1", "taxid": 653931, "species_taxid": 653931, "relation_to_type": "type", "validated": true, "ani": 78.8076, "matched_fragments": 366, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas xinjiangensis", "strain": "strain=DSM 26736", "accession": "GCA_014199255.1", "taxid": 643568, "species_taxid": 643568, "relation_to_type": "type", "validated": true, "ani": 78.5958, "matched_fragments": 315, "total_fragments": 891, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 62.5, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002280565.1", "gtdb_species": "s__Sphingomonas sp002280565", "ani": 96.8646, "matched_fragments": 551, "total_fragments": 891, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.98", "min_intra_species_ani": "96.98", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_001557215.1", "gtdb_species": "s__Sphingomonas sp001557215", "ani": 89.335, "matched_fragments": 618, "total_fragments": 891, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.89", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007833215.1", "gtdb_species": "s__Sphingomonas sp007833215", "ani": 84.7292, "matched_fragments": 654, "total_fragments": 891, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002797435.1", "gtdb_species": "s__Sphingomonas koreensis", "ani": 82.5199, "matched_fragments": 555, "total_fragments": 891, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "98.00", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 72, "status": "-" }, { "accession": "GCA_902826325.1", "gtdb_species": "s__Sphingomonas sp902826325", "ani": 82.2791, "matched_fragments": 405, "total_fragments": 891, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.74", "min_intra_species_ani": "97.74", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001721295.1", "gtdb_species": "s__Sphingomonas turrisvirgatae", "ani": 81.5517, "matched_fragments": 506, "total_fragments": 891, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004792695.1", "gtdb_species": "s__Sphingomonas naasensis", "ani": 79.6343, "matched_fragments": 443, "total_fragments": 891, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_012927115.1", "gtdb_species": "s__Sphingomonas sp012927115", "ani": 79.5343, "matched_fragments": 432, "total_fragments": 891, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001555965.1", "gtdb_species": "s__Sphingomonas sp001555965", "ani": 79.3865, "matched_fragments": 365, "total_fragments": 891, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.33", "min_intra_species_ani": "97.92", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.78", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_001421355.1", "gtdb_species": "s__Sphingomonas sp001421355", "ani": 79.2189, "matched_fragments": 365, "total_fragments": 891, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.29", "min_intra_species_ani": "96.58", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001591025.1", "gtdb_species": "s__Sphingomonas soli", "ani": 79.2038, "matched_fragments": 387, "total_fragments": 891, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003240755.1", "gtdb_species": "s__Sphingomonas hengshuiensis_A", "ani": 79.1692, "matched_fragments": 344, "total_fragments": 891, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006346325.1", "gtdb_species": "s__Sphingomonas japonica", "ani": 79.1081, "matched_fragments": 355, "total_fragments": 891, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017745215.1", "gtdb_species": "s__Sphingomonas sp017745215", "ani": 79.0825, "matched_fragments": 423, "total_fragments": 891, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001421765.1", "gtdb_species": "s__Sphingomonas sp001421765", "ani": 78.9799, "matched_fragments": 381, "total_fragments": 891, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" } ] }