{ "tc_result": [ { "organism_name": "Hydrogenophaga crassostreae", "strain": "strain=LPB0072", "accession": "GCA_001761385.1", "taxid": 1763535, "species_taxid": 1763535, "relation_to_type": "type", "validated": true, "ani": 81.4687, "matched_fragments": 677, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crassostreae", "strain": "strain=LPB0072", "accession": "GCA_001640105.1", "taxid": 1763535, "species_taxid": 1763535, "relation_to_type": "type", "validated": true, "ani": 81.3973, "matched_fragments": 675, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga aromaticivorans", "strain": "strain=D2P1", "accession": "GCA_013387465.1", "taxid": 2610898, "species_taxid": 2610898, "relation_to_type": "type", "validated": true, "ani": 80.4723, "matched_fragments": 645, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga taeniospiralis", "strain": "strain=NBRC 102512", "accession": "GCA_001592305.1", "taxid": 65656, "species_taxid": 65656, "relation_to_type": "type", "validated": true, "ani": 80.429, "matched_fragments": 614, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga palleronii", "strain": "strain=NBRC 102513", "accession": "GCA_001571225.1", "taxid": 65655, "species_taxid": 65655, "relation_to_type": "type", "validated": true, "ani": 80.0644, "matched_fragments": 508, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga flava", "strain": "strain=NBRC 102514", "accession": "GCA_001571145.1", "taxid": 65657, "species_taxid": 65657, "relation_to_type": "type", "validated": true, "ani": 79.9629, "matched_fragments": 593, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga pseudoflava", "strain": "strain=NBRC 102511", "accession": "GCA_001592285.1", "taxid": 47421, "species_taxid": 47421, "relation_to_type": "type", "validated": true, "ani": 79.9375, "matched_fragments": 601, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 79.3789, "matched_fragments": 481, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga borbori", "strain": "strain=LA-38", "accession": "GCA_003417535.1", "taxid": 2294117, "species_taxid": 2294117, "relation_to_type": "type", "validated": true, "ani": 79.3644, "matched_fragments": 479, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax delafieldii", "strain": "strain=DSM 64", "accession": "GCA_007993815.1", "taxid": 47920, "species_taxid": 47920, "relation_to_type": "type", "validated": true, "ani": 78.3688, "matched_fragments": 368, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter lanceolatus", "strain": "strain=ATCC 14669", "accession": "GCA_000381265.1", "taxid": 86182, "species_taxid": 86182, "relation_to_type": "type", "validated": true, "ani": 78.2642, "matched_fragments": 376, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variovorax boronicumulans", "strain": "strain=NBRC 103145", "accession": "GCA_001591345.1", "taxid": 436515, "species_taxid": 436515, "relation_to_type": "type", "validated": true, "ani": 78.2268, "matched_fragments": 341, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax facilis", "strain": "strain=DSM 649", "accession": "GCA_023913775.1", "taxid": 12917, "species_taxid": 12917, "relation_to_type": "type", "validated": true, "ani": 78.095, "matched_fragments": 396, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter humi", "strain": "strain=18x22-1", "accession": "GCA_004681975.1", "taxid": 2530451, "species_taxid": 2530451, "relation_to_type": "type", "validated": true, "ani": 78.0537, "matched_fragments": 320, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachymonas denitrificans", "strain": "strain=DSM 15123", "accession": "GCA_900110225.1", "taxid": 28220, "species_taxid": 28220, "relation_to_type": "type", "validated": true, "ani": 77.9985, "matched_fragments": 217, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter agri", "strain": "strain=G-1-2-2", "accession": "GCA_012927085.1", "taxid": 2728837, "species_taxid": 2728837, "relation_to_type": "type", "validated": true, "ani": 77.7198, "matched_fragments": 326, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, "species_taxid": 160825, "relation_to_type": "type", "validated": true, "ani": 77.6261, "matched_fragments": 253, "total_fragments": 1051, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 84.76, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004795855.1", "gtdb_species": "s__Hydrogenophaga sp004795855", "ani": 83.7133, "matched_fragments": 853, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001761385.1", "gtdb_species": "s__Hydrogenophaga crassostreae", "ani": 81.4583, "matched_fragments": 678, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002842215.1", "gtdb_species": "s__Hydrogenophaga sp002842215", "ani": 80.5676, "matched_fragments": 630, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001770905.1", "gtdb_species": "s__Hydrogenophaga sp001770905", "ani": 80.4794, "matched_fragments": 613, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.83", "min_intra_species_ani": "99.75", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013387465.1", "gtdb_species": "s__Hydrogenophaga aromaticivorans", "ani": 80.4589, "matched_fragments": 645, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.00", "min_intra_species_ani": "95.64", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.82", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_001592305.1", "gtdb_species": "s__Hydrogenophaga taeniospiralis", "ani": 80.4582, "matched_fragments": 611, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018780075.1", "gtdb_species": "s__Hydrogenophaga sp018780075", "ani": 80.3178, "matched_fragments": 596, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011391495.1", "gtdb_species": "s__Hydrogenophaga sp011391495", "ani": 80.272, "matched_fragments": 495, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002001205.1", "gtdb_species": "s__Hydrogenophaga sp002001205", "ani": 80.075, "matched_fragments": 601, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001571225.1", "gtdb_species": "s__Hydrogenophaga palleronii", "ani": 80.0644, "matched_fragments": 508, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011390835.1", "gtdb_species": "s__Hydrogenophaga sp011390835", "ani": 80.0609, "matched_fragments": 515, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001713375.1", "gtdb_species": "s__Hydrogenophaga sp001713375", "ani": 79.9999, "matched_fragments": 564, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013823655.1", "gtdb_species": "s__Hydrogenophaga sp013823655", "ani": 79.9894, "matched_fragments": 376, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001571145.1", "gtdb_species": "s__Hydrogenophaga flava", "ani": 79.9716, "matched_fragments": 592, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013823505.1", "gtdb_species": "s__Hydrogenophaga sp013823505", "ani": 79.9375, "matched_fragments": 484, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001592285.1", "gtdb_species": "s__Hydrogenophaga pseudoflava", "ani": 79.9337, "matched_fragments": 601, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.77", "min_intra_species_ani": "97.69", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_018780385.1", "gtdb_species": "s__Hydrogenophaga sp018780385", "ani": 79.9306, "matched_fragments": 522, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016790705.1", "gtdb_species": "s__Hydrogenophaga sp016790705", "ani": 79.6718, "matched_fragments": 444, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011388215.1", "gtdb_species": "s__Hydrogenophaga sp011388215", "ani": 79.3686, "matched_fragments": 482, "total_fragments": 1051, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.06", "min_intra_species_ani": "99.06", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" } ] }