{ "tc_result": [ { "organism_name": "Limnohabitans planktonicus", "strain": "strain=II-D5", "accession": "GCA_001270065.2", "taxid": 540060, "species_taxid": 540060, "relation_to_type": "type", "validated": true, "ani": 77.722, "matched_fragments": 101, "total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans curvus", "strain": "strain=MWH-C5", "accession": "GCA_003063475.1", "taxid": 323423, "species_taxid": 323423, "relation_to_type": "type", "validated": true, "ani": 77.5762, "matched_fragments": 101, "total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans parvus", "strain": "strain=II-B4", "accession": "GCA_003063455.1", "taxid": 540061, "species_taxid": 540061, "relation_to_type": "type", "validated": true, "ani": 77.3891, "matched_fragments": 85, "total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 77.3588, "matched_fragments": 86, "total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax bucti", "strain": "strain=GSA243-2", "accession": "GCA_005876985.1", "taxid": 2576305, "species_taxid": 2576305, "relation_to_type": "type", "validated": true, "ani": 77.1501, "matched_fragments": 70, "total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax antarcticus", "strain": "strain=DSM 24876", "accession": "GCA_001955735.1", "taxid": 81479, "species_taxid": 81479, "relation_to_type": "type", "validated": true, "ani": 76.917, "matched_fragments": 55, "total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax antarcticus", "strain": "strain=ANT.BR", "accession": "GCA_001938565.1", "taxid": 81479, "species_taxid": 81479, "relation_to_type": "type", "validated": true, "ani": 76.917, "matched_fragments": 55, "total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax lacus", "strain": "strain=IMCC26218", "accession": "GCA_003415675.1", "taxid": 2184758, "species_taxid": 2184758, "relation_to_type": "type", "validated": true, "ani": 76.8208, "matched_fragments": 65, "total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachymonas denitrificans", "strain": "strain=DSM 15123", "accession": "GCA_900110225.1", "taxid": 28220, "species_taxid": 28220, "relation_to_type": "type", "validated": true, "ani": 76.7905, "matched_fragments": 53, "total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax fermentans", "strain": "strain=JCM 7819", "accession": "GCA_002017865.1", "taxid": 28066, "species_taxid": 28066, "relation_to_type": "type", 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"total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax kalamii", "strain": "strain=KNDSW-TSA6", "accession": "GCA_002245625.1", "taxid": 2004485, "species_taxid": 2004485, "relation_to_type": "type", "validated": true, "ani": 76.6468, "matched_fragments": 56, "total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga borbori", "strain": "strain=LA-38", "accession": "GCA_003417535.1", "taxid": 2294117, "species_taxid": 2294117, "relation_to_type": "type", "validated": true, "ani": 76.5809, "matched_fragments": 52, "total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crassostreae", "strain": "strain=LPB0072", "accession": "GCA_001761385.1", "taxid": 1763535, "species_taxid": 1763535, "relation_to_type": "type", "validated": true, "ani": 76.559, "matched_fragments": 58, "total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crassostreae", "strain": "strain=LPB0072", "accession": "GCA_001640105.1", "taxid": 1763535, "species_taxid": 1763535, "relation_to_type": "type", "validated": true, "ani": 76.5567, "matched_fragments": 57, "total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caenimonas koreensis", "strain": "strain=EMB320", "accession": "GCA_009646335.1", "taxid": 367474, "species_taxid": 367474, "relation_to_type": "type", "validated": true, "ani": 76.5501, "matched_fragments": 50, "total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax wautersii", "strain": "strain=DSM 27981", "accession": "GCA_900113035.1", "taxid": 1177982, "species_taxid": 1177982, "relation_to_type": "type", "validated": true, "ani": 76.4573, "matched_fragments": 56, "total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verminephrobacter eiseniae", "strain": "strain=EF01-2", "accession": "GCA_000015565.1", "taxid": 364317, "species_taxid": 364317, "relation_to_type": "type", "validated": true, "ani": 76.4045, "matched_fragments": 56, "total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaromonas vacuolata", "strain": "strain=KCTC 22033", "accession": "GCA_012584515.1", "taxid": 37448, "species_taxid": 37448, "relation_to_type": "type", "validated": true, "ani": 76.3462, "matched_fragments": 53, "total_fragments": 436, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.07, "contamination": 4.63, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_005789825.1", "gtdb_species": "s__Limnohabitans sp005789825", "ani": 84.1258, "matched_fragments": 310, "total_fragments": 436, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans", 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002778325.1", "gtdb_species": "s__Limnohabitans sp002778325", "ani": 77.3111, "matched_fragments": 103, "total_fragments": 436, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903886485.1", "gtdb_species": "s__Limnohabitans sp903886485", "ani": 77.2859, "matched_fragments": 94, "total_fragments": 436, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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"99.41", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_009927195.1", "gtdb_species": "s__Limnohabitans sp009927195", "ani": 76.9397, "matched_fragments": 67, "total_fragments": 436, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016463455.1", "gtdb_species": "s__Rhodoferax sp016463455", "ani": 76.6413, "matched_fragments": 61, "total_fragments": 436, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003417535.1", "gtdb_species": "s__Hydrogenophaga borbori", "ani": 76.5809, "matched_fragments": 52, "total_fragments": 436, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.89", "min_intra_species_ani": "96.31", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_002842205.1", "gtdb_species": "s__PHCI01 sp002842205", "ani": 76.4955, "matched_fragments": 74, "total_fragments": 436, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__PHCI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001428665.1", "gtdb_species": "s__Acidovorax sp001428665", "ani": 76.2869, "matched_fragments": 54, "total_fragments": 436, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.34", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" } ] }