{ "tc_result": [ { "organism_name": "Paraburkholderia fungorum", "strain": "strain=ATCC BAA-463", "accession": "GCA_000961515.1", "taxid": 134537, "species_taxid": 134537, "relation_to_type": "suspected-type", "validated": true, "ani": 98.3405, "matched_fragments": 1330, "total_fragments": 1522, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Paraburkholderia fungorum", "strain": "strain=LMG 16225", "accession": "GCA_902833645.1", "taxid": 134537, "species_taxid": 134537, "relation_to_type": "suspected-type", "validated": true, "ani": 97.9167, "matched_fragments": 1282, "total_fragments": 1522, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Paraburkholderia fungorum", "strain": "strain=NBRC 102489", "accession": "GCA_000685055.1", "taxid": 134537, "species_taxid": 134537, "relation_to_type": "type", "validated": true, "ani": 97.802, "matched_fragments": 1238, "total_fragments": 1522, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Paraburkholderia agricolaris", "strain": "strain=BaQS159", "accession": "GCA_009455635.1", "taxid": 2152888, "species_taxid": 2152888, "relation_to_type": "type", "validated": true, "ani": 95.4959, "matched_fragments": 1093, "total_fragments": 1522, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Paraburkholderia haematera", "strain": "strain=LMG 31837", "accession": "GCA_905220975.1", "taxid": 2793077, "species_taxid": 2793077, "relation_to_type": "type", "validated": true, "ani": 88.864, "matched_fragments": 975, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia elongata", "strain": "strain=5N", "accession": "GCA_013177735.1", "taxid": 2675747, "species_taxid": 2675747, "relation_to_type": "type", "validated": true, "ani": 88.8571, "matched_fragments": 992, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia nemoris", "strain": "strain=LMG 31836", "accession": "GCA_905221015.1", "taxid": 2793076, "species_taxid": 2793076, "relation_to_type": "type", "validated": true, "ani": 88.6754, "matched_fragments": 1030, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia solitsugae", "strain": "strain=1N", "accession": "GCA_013177695.1", "taxid": 2675748, "species_taxid": 2675748, "relation_to_type": "type", "validated": true, "ani": 88.4151, "matched_fragments": 1008, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia caffeinilytica", "strain": "strain=CF1", "accession": "GCA_003368325.1", "taxid": 1761016, "species_taxid": 1761016, "relation_to_type": "type", "validated": true, "ani": 88.3962, "matched_fragments": 937, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia domus", "strain": "strain=LMG 31832", "accession": "GCA_905220705.1", "taxid": 2793075, "species_taxid": 2793075, "relation_to_type": "type", "validated": true, "ani": 88.3621, "matched_fragments": 1016, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia kirstenboschensis", "strain": "strain=KB15", "accession": "GCA_001636975.1", "taxid": 1245436, "species_taxid": 1245436, "relation_to_type": "type", "validated": true, "ani": 83.0177, "matched_fragments": 725, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 82.7294, "matched_fragments": 758, "total_fragments": 1522, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 52.82, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_902833645.1", "gtdb_species": "s__Paraburkholderia fungorum", "ani": 97.9026, "matched_fragments": 1283, "total_fragments": 1522, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.62", "min_intra_species_ani": "95.59", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.75", "num_clustered_genomes": 14, "status": "conclusive" }, { "accession": "GCF_003610895.1", "gtdb_species": "s__Paraburkholderia fungorum_B", "ani": 89.829, "matched_fragments": 1097, "total_fragments": 1522, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012927345.1", "gtdb_species": "s__Paraburkholderia sp012927345", "ani": 89.1158, "matched_fragments": 1065, "total_fragments": 1522, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_905220975.1", "gtdb_species": "s__Paraburkholderia sp905220975", "ani": 88.8889, "matched_fragments": 973, "total_fragments": 1522, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013177735.1", "gtdb_species": "s__Paraburkholderia sp013177735", "ani": 88.8721, "matched_fragments": 990, "total_fragments": 1522, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001634365.1", "gtdb_species": "s__Paraburkholderia sp001634365", "ani": 88.8012, "matched_fragments": 883, "total_fragments": 1522, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900116445.1", "gtdb_species": "s__Paraburkholderia aspalathi", "ani": 88.7937, "matched_fragments": 1050, "total_fragments": 1522, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.47", "min_intra_species_ani": "95.19", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.72", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCF_900142905.1", "gtdb_species": "s__Paraburkholderia sp900142905", "ani": 88.6578, "matched_fragments": 1070, "total_fragments": 1522, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.29", "min_intra_species_ani": "98.24", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.82", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_009690905.1", "gtdb_species": "s__Paraburkholderia madseniana", "ani": 88.6304, "matched_fragments": 1050, "total_fragments": 1522, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.82", "min_intra_species_ani": "98.82", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_905220835.1", "gtdb_species": "s__Paraburkholderia sp905220835", "ani": 88.5001, "matched_fragments": 1005, "total_fragments": 1522, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.73", "min_intra_species_ani": "99.56", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCF_003610295.1", "gtdb_species": "s__Paraburkholderia sp003610295", "ani": 88.4851, "matched_fragments": 1015, "total_fragments": 1522, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013177695.1", "gtdb_species": "s__Paraburkholderia sp013177695", "ani": 88.4033, "matched_fragments": 1009, "total_fragments": 1522, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003368325.1", "gtdb_species": "s__Paraburkholderia caffeinilytica", "ani": 88.3778, "matched_fragments": 939, "total_fragments": 1522, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003353175.1", "gtdb_species": "s__Paraburkholderia lacunae", "ani": 85.6419, "matched_fragments": 868, "total_fragments": 1522, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }