{
    "tc_result": [
        {
            "organism_name": "Shigella sonnei",
            "strain": "strain=ATCC 29930",
            "accession": "GCA_002950395.1",
            "taxid": 624,
            "species_taxid": 624,
            "relation_to_type": "type",
            "validated": true,
            "ani": 97.7989,
            "matched_fragments": 261,
            "total_fragments": 287,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella sonnei",
            "strain": "strain=NCTC12984",
            "accession": "GCA_900457155.1",
            "taxid": 624,
            "species_taxid": 624,
            "relation_to_type": "type",
            "validated": true,
            "ani": 97.7839,
            "matched_fragments": 262,
            "total_fragments": 287,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella boydii",
            "strain": "strain=NCTC12985",
            "accession": "GCA_900457095.1",
            "taxid": 621,
            "species_taxid": 621,
            "relation_to_type": "type",
            "validated": true,
            "ani": 97.7438,
            "matched_fragments": 245,
            "total_fragments": 287,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella boydii",
            "strain": "strain=FDAARGOS_1139",
            "accession": "GCA_016726285.1",
            "taxid": 621,
            "species_taxid": 621,
            "relation_to_type": "type",
            "validated": true,
            "ani": 97.5549,
            "matched_fragments": 247,
            "total_fragments": 287,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella flexneri 2a",
            "strain": "strain=ATCC 29903",
            "accession": "GCA_002950215.1",
            "taxid": 42897,
            "species_taxid": 623,
            "relation_to_type": "type",
            "validated": true,
            "ani": 97.523,
            "matched_fragments": 254,
            "total_fragments": 287,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella boydii",
            "strain": "strain=DMB SH130",
            "accession": "GCA_003572535.1",
            "taxid": 621,
            "species_taxid": 621,
            "relation_to_type": "type",
            "validated": true,
            "ani": 97.4381,
            "matched_fragments": 239,
            "total_fragments": 287,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella dysenteriae",
            "strain": "strain=NCTC4837",
            "accession": "GCA_900457215.1",
            "taxid": 622,
            "species_taxid": 622,
            "relation_to_type": "suspected-type",
            "validated": true,
            "ani": 96.8434,
            "matched_fragments": 237,
            "total_fragments": 287,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Shigella dysenteriae",
            "strain": "strain=ATCC 13313",
            "accession": "GCA_002949675.1",
            "taxid": 622,
            "species_taxid": 622,
            "relation_to_type": "suspected-type",
            "validated": true,
            "ani": 96.8052,
            "matched_fragments": 239,
            "total_fragments": 287,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Escherichia coli",
            "strain": "strain=DSM 30083",
            "accession": "GCA_024519395.1",
            "taxid": 562,
            "species_taxid": 562,
            "relation_to_type": "neotype",
            "validated": true,
            "ani": 96.5764,
            "matched_fragments": 263,
            "total_fragments": 287,
            "ani_threshold": 95,
            "status": "indistinguishable"
        },
        {
            "organism_name": "Escherichia albertii",
            "strain": "strain=NBRC 107761",
            "accession": "GCA_000759775.1",
            "taxid": 208962,
            "species_taxid": 208962,
            "relation_to_type": "type",
            "validated": true,
            "ani": 89.6312,
            "matched_fragments": 229,
            "total_fragments": 287,
            "ani_threshold": 95,
            "status": "below_threshold"
        },
        {
            "organism_name": "Escherichia albertii",
            "strain": "strain=DSM 17582",
            "accession": "GCA_022833075.1",
            "taxid": 208962,
            "species_taxid": 208962,
            "relation_to_type": "type",
            "validated": true,
            "ani": 89.5719,
            "matched_fragments": 236,
            "total_fragments": 287,
            "ani_threshold": 95,
            "status": "below_threshold"
        },
        {
            "organism_name": "Salmonella enterica subsp. enterica",
            "strain": "strain=PartC-Senterica-RM8376",
            "accession": "GCA_022869965.1",
            "taxid": 59201,
            "species_taxid": 28901,
            "relation_to_type": "suspected-type",
            "validated": true,
            "ani": 82.1799,
            "matched_fragments": 179,
            "total_fragments": 287,
            "ani_threshold": 95,
            "status": "below_threshold"
        }
    ],
    "cc_result": {
        "completeness": 69.9,
        "contamination": 9.85,
        "strain_heterogeneity": 0.0
    },
    "gtdb_result": [
        {
            "accession": "GCF_003697165.2",
            "gtdb_species": "s__Escherichia coli",
            "ani": 96.5899,
            "matched_fragments": 262,
            "total_fragments": 287,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "97.07",
            "min_intra_species_ani": "95.57",
            "mean_intra_species_af": "0.85",
            "min_intra_species_af": "0.72",
            "num_clustered_genomes": 26859,
            "status": "conclusive"
        },
        {
            "accession": "GCF_002965065.1",
            "gtdb_species": "s__Escherichia sp002965065",
            "ani": 94.0923,
            "matched_fragments": 234,
            "total_fragments": 287,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "N/A",
            "min_intra_species_ani": "N/A",
            "mean_intra_species_af": "N/A",
            "min_intra_species_af": "N/A",
            "num_clustered_genomes": 1,
            "status": "-"
        },
        {
            "accession": "GCF_902498915.1",
            "gtdb_species": "s__Escherichia ruysiae",
            "ani": 92.9099,
            "matched_fragments": 242,
            "total_fragments": 287,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "97.82",
            "min_intra_species_ani": "96.45",
            "mean_intra_species_af": "0.94",
            "min_intra_species_af": "0.86",
            "num_clustered_genomes": 36,
            "status": "-"
        },
        {
            "accession": "GCF_004211955.1",
            "gtdb_species": "s__Escherichia sp004211955",
            "ani": 92.711,
            "matched_fragments": 248,
            "total_fragments": 287,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "100.00",
            "min_intra_species_ani": "100.00",
            "mean_intra_species_af": "1.00",
            "min_intra_species_af": "1.00",
            "num_clustered_genomes": 2,
            "status": "-"
        },
        {
            "accession": "GCF_005843885.1",
            "gtdb_species": "s__Escherichia sp005843885",
            "ani": 92.5474,
            "matched_fragments": 251,
            "total_fragments": 287,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "96.83",
            "min_intra_species_ani": "95.39",
            "mean_intra_species_af": "0.87",
            "min_intra_species_af": "0.80",
            "num_clustered_genomes": 37,
            "status": "-"
        },
        {
            "accession": "GCF_011881725.1",
            "gtdb_species": "s__Escherichia coli_E",
            "ani": 92.2514,
            "matched_fragments": 241,
            "total_fragments": 287,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "N/A",
            "min_intra_species_ani": "N/A",
            "mean_intra_species_af": "N/A",
            "min_intra_species_af": "N/A",
            "num_clustered_genomes": 1,
            "status": "-"
        },
        {
            "accession": "GCF_002900365.1",
            "gtdb_species": "s__Escherichia marmotae",
            "ani": 91.1104,
            "matched_fragments": 245,
            "total_fragments": 287,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "99.02",
            "min_intra_species_ani": "98.77",
            "mean_intra_species_af": "0.90",
            "min_intra_species_af": "0.85",
            "num_clustered_genomes": 82,
            "status": "-"
        },
        {
            "accession": "GCF_000026225.1",
            "gtdb_species": "s__Escherichia fergusonii",
            "ani": 91.1093,
            "matched_fragments": 219,
            "total_fragments": 287,
            "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
            "ani_circumscription_radius": 95.0,
            "mean_intra_species_ani": "98.80",
            "min_intra_species_ani": "98.39",
            "mean_intra_species_af": "0.93",
            "min_intra_species_af": "0.89",
            "num_clustered_genomes": 77,
            "status": "-"
        }
    ]
}