{ "tc_result": [ { "organism_name": "Vibrio coralliilyticus", "strain": "strain=ATCC BAA-450", "accession": "GCA_000176135.1", "taxid": 190893, "species_taxid": 190893, "relation_to_type": "type", "validated": true, "ani": 88.463, "matched_fragments": 1205, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tubiashii", "strain": "strain=ATCC 19109", "accession": "GCA_000772105.1", "taxid": 29498, "species_taxid": 29498, "relation_to_type": "suspected-type", "validated": true, "ani": 81.4007, "matched_fragments": 553, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio tubiashii", "strain": "strain=ATCC 19109", "accession": "GCA_000222665.2", "taxid": 29498, "species_taxid": 29498, "relation_to_type": "suspected-type", "validated": true, "ani": 81.3037, "matched_fragments": 527, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio europaeus", "strain": "strain=PP-638", "accession": "GCA_001695575.1", "taxid": 300876, "species_taxid": 300876, "relation_to_type": "type", "validated": true, "ani": 81.1806, "matched_fragments": 545, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aquaticus", "strain": "strain=BEI207", "accession": "GCA_003970385.1", "taxid": 2496559, "species_taxid": 2496559, "relation_to_type": "type", "validated": true, "ani": 80.7013, "matched_fragments": 473, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio orientalis", "strain": "strain=CIP 102891", "accession": "GCA_000176235.1", "taxid": 28175, "species_taxid": 28175, "relation_to_type": "type", "validated": true, "ani": 80.6661, "matched_fragments": 483, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio orientalis", "strain": "strain=CIP 102891", "accession": "GCA_000222645.2", "taxid": 28175, "species_taxid": 28175, "relation_to_type": "type", "validated": true, "ani": 80.5467, "matched_fragments": 474, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio rotiferianus", "strain": "strain=CAIM 577", "accession": "GCA_002741985.1", "taxid": 190895, "species_taxid": 190895, "relation_to_type": "type", "validated": true, "ani": 80.3323, "matched_fragments": 350, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=DSM 19584", "accession": "GCA_001274805.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 80.1938, "matched_fragments": 450, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=NBRC 15637", "accession": "GCA_001591105.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 80.1645, "matched_fragments": 443, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio campbellii", "strain": "strain=CAIM 519", "accession": "GCA_000334195.1", "taxid": 680, "species_taxid": 680, "relation_to_type": "type", "validated": true, "ani": 79.9777, "matched_fragments": 351, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio alginolyticus", "strain": "strain=NCTC12160", "accession": "GCA_900460285.1", "taxid": 663, "species_taxid": 663, "relation_to_type": "type", "validated": true, "ani": 79.8669, "matched_fragments": 338, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio natriegens", "strain": "strain=14048", "accession": "GCA_024508015.1", "taxid": 691, "species_taxid": 691, "relation_to_type": "type", "validated": true, "ani": 79.8488, "matched_fragments": 326, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hyugaensis", "strain": "strain=090810a", "accession": "GCA_002906655.1", "taxid": 1534743, "species_taxid": 1534743, "relation_to_type": "type", "validated": true, "ani": 79.8302, "matched_fragments": 376, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio alginolyticus", "strain": "strain=FDAARGOS_97", "accession": "GCA_001471275.2", "taxid": 663, "species_taxid": 663, "relation_to_type": "type", "validated": true, "ani": 79.8264, "matched_fragments": 339, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hyugaensis", "strain": "strain=090810a", "accession": "GCA_000818435.1", "taxid": 1534743, "species_taxid": 1534743, "relation_to_type": "type", "validated": true, "ani": 79.7424, "matched_fragments": 368, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio antiquarius", "strain": "strain=EX25", "accession": "GCA_000024825.1", "taxid": 150340, "species_taxid": 150340, "relation_to_type": "suspected-type", "validated": true, "ani": 79.7414, "matched_fragments": 349, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 79.6445, "matched_fragments": 333, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pelagius", "strain": "strain=ATCC 25916", "accession": "GCA_024347575.1", "taxid": 28169, "species_taxid": 28169, "relation_to_type": "type", "validated": true, "ani": 79.5954, "matched_fragments": 311, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 79.5632, "matched_fragments": 330, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=LBS 2", "accession": "GCA_008830195.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 79.5368, "matched_fragments": 339, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio antiquarius", "strain": "strain=EX25", "accession": "GCA_000152485.1", "taxid": 150340, "species_taxid": 150340, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2965, "matched_fragments": 308, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio sonorensis", "strain": "strain=CAIM 1076", "accession": "GCA_001854765.1", "taxid": 1004316, "species_taxid": 1004316, "relation_to_type": "type", "validated": true, "ani": 78.995, "matched_fragments": 309, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio diazotrophicus", "strain": "strain=NBRC 103148", "accession": "GCA_000740015.1", "taxid": 685, "species_taxid": 685, "relation_to_type": "type", "validated": true, "ani": 78.8722, "matched_fragments": 275, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 66.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000967495.1", "gtdb_species": "s__Vibrio neptunius", "ani": 97.9795, "matched_fragments": 1371, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.83", "min_intra_species_ani": "96.84", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCF_000176135.1", "gtdb_species": "s__Vibrio coralliilyticus", "ani": 88.463, "matched_fragments": 1205, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.33", "min_intra_species_ani": "96.21", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 36, "status": "-" }, { "accession": "GCF_013113835.1", "gtdb_species": "s__Vibrio sp013113835", "ani": 88.1181, "matched_fragments": 1173, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000772105.1", "gtdb_species": "s__Vibrio tubiashii", "ani": 81.4003, "matched_fragments": 553, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "95.85", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001695575.1", "gtdb_species": "s__Vibrio europaeus", "ani": 81.1931, "matched_fragments": 544, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "98.30", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000189275.1", "gtdb_species": "s__Vibrio sinaloensis_B", "ani": 80.984, "matched_fragments": 436, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000808535.1", "gtdb_species": "s__Vibrio sinaloensis", "ani": 80.8603, "matched_fragments": 484, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.52", "min_intra_species_ani": "97.23", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_004551525.1", "gtdb_species": "s__Vibrio ouci", "ani": 80.7583, "matched_fragments": 490, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001399455.2", "gtdb_species": "s__Vibrio bivalvicida", "ani": 80.7532, "matched_fragments": 527, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "98.39", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003970385.1", "gtdb_species": "s__Vibrio aquaticus", "ani": 80.722, "matched_fragments": 471, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000189255.1", "gtdb_species": "s__Vibrio brasiliensis", "ani": 80.6923, "matched_fragments": 488, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006124995.1", "gtdb_species": "s__Vibrio sp006124995", "ani": 80.3947, "matched_fragments": 466, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001591105.1", "gtdb_species": "s__Vibrio nereis", "ani": 80.1825, "matched_fragments": 442, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000354175.2", "gtdb_species": "s__Vibrio alginolyticus", "ani": 79.8095, "matched_fragments": 340, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "98.30", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 169, "status": "-" }, { "accession": "GCA_001048675.1", "gtdb_species": "s__Vibrio diabolicus", "ani": 79.6733, "matched_fragments": 350, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.98", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 43, "status": "-" }, { "accession": "GCF_009938205.1", "gtdb_species": "s__Vibrio panuliri", "ani": 79.5678, "matched_fragments": 331, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "98.57", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.94", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000740015.1", "gtdb_species": "s__Vibrio diazotrophicus", "ani": 78.8493, "matched_fragments": 277, "total_fragments": 1492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.42", "min_intra_species_ani": "96.82", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 7, "status": "-" } ] }