{ "tc_result": [ { "organism_name": "Francisella adeliensis", "strain": "strain=FDC440", "accession": "GCA_003290445.1", "taxid": 2007306, "species_taxid": 2007306, "relation_to_type": "type", "validated": true, "ani": 79.9856, "matched_fragments": 216, "total_fragments": 440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella noatunensis subsp. noatunensis", "strain": "strain=2005/50/F292-6", "accession": "GCA_009823375.1", "taxid": 360196, "species_taxid": 657445, "relation_to_type": "type", "validated": true, "ani": 78.1405, "matched_fragments": 120, "total_fragments": 440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella philomiragia", "strain": "strain=O#319L", "accession": "GCA_000833455.1", "taxid": 28110, "species_taxid": 28110, "relation_to_type": "type", "validated": true, "ani": 78.0152, "matched_fragments": 141, "total_fragments": 440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella philomiragia", "strain": "strain=ATCC 25015", "accession": "GCA_000156715.1", "taxid": 28110, "species_taxid": 28110, "relation_to_type": "type", "validated": true, "ani": 77.9806, "matched_fragments": 141, "total_fragments": 440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella hispaniensis", "strain": "strain=CCUG 58020", "accession": "GCA_001885235.1", "taxid": 622488, "species_taxid": 622488, "relation_to_type": "type", "validated": true, "ani": 77.7049, "matched_fragments": 148, "total_fragments": 440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allofrancisella inopinata", "strain": "strain=SYSU YG23", "accession": "GCA_012222965.1", "taxid": 1085647, "species_taxid": 1085647, "relation_to_type": "type", "validated": true, "ani": 77.6846, "matched_fragments": 130, "total_fragments": 440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella salina", "strain": "strain=TX07-7308", "accession": "GCA_000219045.1", "taxid": 573569, "species_taxid": 573569, "relation_to_type": "type", "validated": true, "ani": 77.6704, "matched_fragments": 149, "total_fragments": 440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella uliginis", "strain": "strain=TX07-7310", "accession": "GCA_001895265.1", "taxid": 573570, "species_taxid": 573570, "relation_to_type": "type", "validated": true, "ani": 77.6666, "matched_fragments": 158, "total_fragments": 440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella hispaniensis", "strain": "strain=CCUG 58020", "accession": "GCA_001608445.1", "taxid": 622488, "species_taxid": 622488, "relation_to_type": "type", "validated": true, "ani": 77.6384, "matched_fragments": 145, "total_fragments": 440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allofrancisella inopinata", "strain": "strain=DSM 101834", "accession": "GCA_004365555.1", "taxid": 1085647, "species_taxid": 1085647, "relation_to_type": "type", "validated": true, "ani": 77.58, "matched_fragments": 134, "total_fragments": 440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella tularensis subsp. novicida", "strain": "strain=U112", "accession": "GCA_000014645.1", "taxid": 264, "species_taxid": 263, "relation_to_type": "type", "validated": true, "ani": 77.4498, "matched_fragments": 141, "total_fragments": 440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Francisella tularensis subsp. novicida", "strain": "strain=U112", "accession": "GCA_000833375.1", "taxid": 264, "species_taxid": 263, "relation_to_type": "type", "validated": true, "ani": 77.4018, "matched_fragments": 146, "total_fragments": 440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allofrancisella frigidaquae", "strain": "strain=SYSU 10HL1970", "accession": "GCA_012222825.1", "taxid": 1085644, "species_taxid": 1085644, "relation_to_type": "type", "validated": true, "ani": 77.3518, "matched_fragments": 114, "total_fragments": 440, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 80.9, "contamination": 2.08, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003290445.1", "gtdb_species": "s__Francisella_A adeliensis", "ani": 79.9856, "matched_fragments": 216, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "95.45", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.93", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000764555.1", "gtdb_species": "s__Francisella sp000764555", "ani": 78.3152, "matched_fragments": 170, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014844275.1", "gtdb_species": "s__Francisella noatunensis", "ani": 78.1338, "matched_fragments": 124, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.78", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 24, "status": "-" }, { "accession": "GCF_000156715.1", "gtdb_species": "s__Francisella philomiragia", "ani": 77.9806, "matched_fragments": 141, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "97.38", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 49, "status": "-" }, { "accession": "GCF_001885235.1", "gtdb_species": "s__Francisella hispaniensis", "ani": 77.7049, "matched_fragments": 148, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "97.74", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_012222965.1", "gtdb_species": "s__Allofrancisella inopinata", "ani": 77.6977, "matched_fragments": 130, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Allofrancisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007923265.1", "gtdb_species": "s__Francisella salimarina", "ani": 77.6827, "matched_fragments": 143, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.26", "min_intra_species_ani": "97.77", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_001895265.1", "gtdb_species": "s__Francisella uliginis", "ani": 77.6666, "matched_fragments": 158, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008711465.1", "gtdb_species": "s__Francisella sp008711465", "ani": 77.6513, "matched_fragments": 151, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001042525.2", "gtdb_species": "s__Francisella orientalis", "ani": 77.6161, "matched_fragments": 134, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "95.40", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.93", "num_clustered_genomes": 54, "status": "-" }, { "accession": "GCF_003347135.1", "gtdb_species": "s__Francisella opportunistica", "ani": 77.5048, "matched_fragments": 131, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.85", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000815225.1", "gtdb_species": "s__Allofrancisella guangzhouensis", "ani": 77.3747, "matched_fragments": 112, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Allofrancisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000008985.1", "gtdb_species": "s__Francisella tularensis", "ani": 77.3729, "matched_fragments": 148, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Francisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.28", "min_intra_species_ani": "97.47", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.89", "num_clustered_genomes": 860, "status": "-" }, { "accession": "GCF_012222825.1", "gtdb_species": "s__Allofrancisella frigidaquae", "ani": 77.3518, "matched_fragments": 114, "total_fragments": 440, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Allofrancisella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "98.33", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" } ] }