{ "tc_result": [ { "organism_name": "Pseudohongiella acticola", "strain": "strain=KCTC 42131", "accession": "GCA_001758195.1", "taxid": 1524254, "species_taxid": 1524254, "relation_to_type": "type", "validated": true, "ani": 80.6324, "matched_fragments": 682, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudohongiella spirulinae", "strain": "strain=KCTC 32221", "accession": "GCA_001444425.1", "taxid": 1249552, "species_taxid": 1249552, "relation_to_type": "type", "validated": true, "ani": 77.6221, "matched_fragments": 259, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudohongiella nitratireducens", "strain": "strain=CGMCC 1.15425", "accession": "GCA_014642795.1", "taxid": 1768907, "species_taxid": 1768907, "relation_to_type": "type", "validated": true, "ani": 76.7565, "matched_fragments": 142, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudohongiella nitratireducens", "strain": "strain=SCS-49", "accession": "GCA_001642735.1", "taxid": 1768907, "species_taxid": 1768907, "relation_to_type": "type", "validated": true, "ani": 76.7389, "matched_fragments": 148, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas bauzanensis", "strain": "strain=DSM 22558", "accession": "GCA_900111225.1", "taxid": 653930, "species_taxid": 653930, "relation_to_type": "type", "validated": true, "ani": 76.3292, "matched_fragments": 51, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fluvialis", "strain": "strain=ASS-1", "accession": "GCA_002234375.1", "taxid": 1793966, "species_taxid": 1793966, "relation_to_type": "suspected-type", "validated": true, "ani": 76.1819, "matched_fragments": 62, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas aestusnigri", "strain": "strain=CECT 8317", "accession": "GCA_900108005.1", "taxid": 857252, "species_taxid": 857252, "relation_to_type": "type", "validated": true, "ani": 76.0959, "matched_fragments": 69, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas aestusnigri", "strain": "strain=VGXO14", "accession": "GCA_002197985.1", "taxid": 857252, "species_taxid": 857252, "relation_to_type": "type", "validated": true, "ani": 76.0588, "matched_fragments": 69, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mendocina", "strain": "strain=NBRC 14162", "accession": "GCA_000813265.1", "taxid": 300, "species_taxid": 300, "relation_to_type": "suspected-type", "validated": true, "ani": 76.045, "matched_fragments": 63, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=FDAARGOS_877", "accession": "GCA_016028515.1", "taxid": 2968969, "species_taxid": 2968969, "relation_to_type": "type", "validated": true, "ani": 76.0251, "matched_fragments": 58, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mendocina", "strain": "strain=NCTC10897", "accession": "GCA_900636545.1", "taxid": 300, "species_taxid": 300, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0203, "matched_fragments": 64, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NCTC10367", "accession": "GCA_900455475.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 76.0134, "matched_fragments": 69, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=DNSP21", "accession": "GCA_002890935.1", "taxid": 2968969, "species_taxid": 2968969, "relation_to_type": "type", "validated": true, "ani": 76.0063, "matched_fragments": 59, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=DNSP21", "accession": "GCA_024448335.1", "taxid": 2968969, "species_taxid": 2968969, "relation_to_type": "type", "validated": true, "ani": 75.9607, "matched_fragments": 59, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronospirillum operosum", "strain": "strain=G-116", "accession": "GCA_004768465.1", "taxid": 2759953, "species_taxid": 2759953, "relation_to_type": "type", "validated": true, "ani": 75.8633, "matched_fragments": 64, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas toyotomiensis", "strain": "strain=DSM 26169", "accession": "GCA_002741095.1", "taxid": 554344, "species_taxid": 554344, "relation_to_type": "type", "validated": true, "ani": 75.8525, "matched_fragments": 64, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas toyotomiensis", "strain": "strain=JCM 15604", "accession": "GCA_900115695.1", "taxid": 554344, "species_taxid": 554344, "relation_to_type": "type", "validated": true, "ani": 75.8299, "matched_fragments": 65, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas stutzeri", "strain": "strain=CGMCC 1.1803", "accession": "GCA_000219605.1", "taxid": 316, "species_taxid": 316, "relation_to_type": "type", "validated": true, "ani": 75.8037, "matched_fragments": 58, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas stutzeri", "strain": "strain=FDAARGOS_875", "accession": "GCA_016028655.1", "taxid": 316, "species_taxid": 316, "relation_to_type": "type", "validated": true, "ani": 75.7855, "matched_fragments": 59, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guryensis", "strain": "strain=SR9", "accession": "GCA_014164785.1", "taxid": 2759165, "species_taxid": 2759165, "relation_to_type": "type", "validated": true, "ani": 75.4344, "matched_fragments": 77, "total_fragments": 1122, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002711845.1", "gtdb_species": "s__Pseudohongiella sp002711845", "ani": 99.9987, "matched_fragments": 1117, "total_fragments": 1122, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__Pseudohongiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_011050365.1", "gtdb_species": "s__Pseudohongiella sp011050365", "ani": 81.4891, "matched_fragments": 777, "total_fragments": 1122, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__Pseudohongiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001758195.1", "gtdb_species": "s__Pseudohongiella acticola", "ani": 80.6324, "matched_fragments": 682, "total_fragments": 1122, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__Pseudohongiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001444425.1", "gtdb_species": "s__Pseudohongiella spirulinae", "ani": 77.6221, "matched_fragments": 259, "total_fragments": 1122, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__Pseudohongiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002354805.1", "gtdb_species": "s__Pseudohongiella sp002354805", "ani": 77.4322, "matched_fragments": 293, "total_fragments": 1122, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__Pseudohongiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.49", "min_intra_species_ani": "99.10", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002706685.1", "gtdb_species": "s__Pseudohongiella sp002706685", "ani": 77.3999, "matched_fragments": 288, "total_fragments": 1122, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__Pseudohongiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_003556835.1", "gtdb_species": "s__PWQG01 sp003556835", "ani": 77.0226, "matched_fragments": 145, "total_fragments": 1122, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__PWQG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004535785.1", "gtdb_species": "s__Pseudohongiella sp004535785", "ani": 76.9622, "matched_fragments": 205, "total_fragments": 1122, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__Pseudohongiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001802565.1", "gtdb_species": "s__UBA5078 sp001802565", "ani": 76.4456, "matched_fragments": 107, "total_fragments": 1122, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__UBA5078", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903876785.1", "gtdb_species": "s__UBA5078 sp903876785", "ani": 76.189, "matched_fragments": 81, "total_fragments": 1122, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudohongiellaceae;g__UBA5078", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "99.13", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.78", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002197985.1", "gtdb_species": "s__Pseudomonas_D aestusnigri", "ani": 76.0588, "matched_fragments": 69, "total_fragments": 1122, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.11", "min_intra_species_ani": "96.74", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.81", "num_clustered_genomes": 25, "status": "-" } ] }