{ "tc_result": [ { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=NCTC10332", "accession": "GCA_001457615.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 98.5812, "matched_fragments": 194, "total_fragments": 203, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_012987025.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 98.5378, "matched_fragments": 193, "total_fragments": 203, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_001042925.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 98.5378, "matched_fragments": 193, "total_fragments": 203, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=JCM 5962", "accession": "GCA_022496575.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 98.5253, "matched_fragments": 194, "total_fragments": 203, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 98.4901, "matched_fragments": 193, "total_fragments": 203, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_900167195.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 98.4828, "matched_fragments": 194, "total_fragments": 203, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=CCUG 551", "accession": "GCA_008801675.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 98.4793, "matched_fragments": 193, "total_fragments": 203, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 82.2608, "matched_fragments": 113, "total_fragments": 203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 81.4754, "matched_fragments": 123, "total_fragments": 203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 81.4545, "matched_fragments": 121, "total_fragments": 203, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 74.35, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001457615.1", "gtdb_species": "s__Pseudomonas aeruginosa", "ani": 98.5812, "matched_fragments": 194, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "97.38", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.84", "num_clustered_genomes": 5623, "status": "conclusive" }, { "accession": "GCF_000017205.1", "gtdb_species": "s__Pseudomonas aeruginosa_A", "ani": 93.9837, "matched_fragments": 194, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.07", "min_intra_species_ani": "98.78", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.80", "num_clustered_genomes": 42, "status": "-" }, { "accession": "GCF_900103845.1", "gtdb_species": "s__Pseudomonas jinjuensis", "ani": 84.5133, "matched_fragments": 142, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900112375.1", "gtdb_species": "s__Pseudomonas citronellolis", "ani": 84.4381, "matched_fragments": 159, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.078, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.08", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 26, "status": "-" }, { "accession": "GCF_900187975.1", "gtdb_species": "s__Pseudomonas delhiensis", "ani": 84.3729, "matched_fragments": 163, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.078, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "97.59", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_017589465.1", "gtdb_species": "s__Pseudomonas sp017589465", "ani": 83.4598, "matched_fragments": 141, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_904061905.1", "gtdb_species": "s__Pseudomonas_E carbonaria", "ani": 83.1264, "matched_fragments": 132, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018398425.1", "gtdb_species": "s__Pseudomonas_E lalucatii", "ani": 82.2608, "matched_fragments": 113, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.68", "min_intra_species_ani": "99.28", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000016565.1", "gtdb_species": "s__Pseudomonas_E mendocina_A", "ani": 81.9714, "matched_fragments": 122, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "97.37", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_902506505.1", "gtdb_species": "s__Pseudomonas_E sp902506505", "ani": 81.8834, "matched_fragments": 113, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.45", "min_intra_species_ani": "95.45", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000474255.1", "gtdb_species": "s__Pseudomonas_F alcaligenes_A", "ani": 81.828, "matched_fragments": 153, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_F", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.08", "min_intra_species_ani": "97.69", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002483005.1", "gtdb_species": "s__Pseudomonas_E sp002483005", "ani": 81.4673, "matched_fragments": 74, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900104805.1", "gtdb_species": "s__Pseudomonas_K oryzae", "ani": 81.4641, "matched_fragments": 108, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_K", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004801855.1", "gtdb_species": "s__Pseudomonas_K sp004801855", "ani": 81.365, "matched_fragments": 101, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_K", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000761545.1", "gtdb_species": "s__Pseudomonas_E sp000761545", "ani": 81.1457, "matched_fragments": 117, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004521985.1", "gtdb_species": "s__Pseudomonas_E khazarica", "ani": 81.1324, "matched_fragments": 128, "total_fragments": 203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "98.01", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 12, "status": "-" } ] }