{ "tc_result": [ { "organism_name": "Pseudomonas songnenensis", "strain": "strain=NEAU-ST5-5", "accession": "GCA_003696315.1", "taxid": 1176259, "species_taxid": 1176259, "relation_to_type": "type", "validated": true, "ani": 92.9997, "matched_fragments": 1222, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas songnenensis", "strain": "strain=DSM 27560T", "accession": "GCA_024448495.1", "taxid": 1176259, "species_taxid": 1176259, "relation_to_type": "type", "validated": true, "ani": 92.9959, "matched_fragments": 1216, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas kunmingensis", "strain": "strain=DSM 25974", "accession": "GCA_024397575.1", "taxid": 1211807, "species_taxid": 1211807, "relation_to_type": "type", "validated": true, "ani": 89.0693, "matched_fragments": 1138, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas kunmingensis", "strain": "strain=DSM 25974", "accession": "GCA_900114065.1", "taxid": 1211807, "species_taxid": 1211807, "relation_to_type": "type", "validated": true, "ani": 89.0332, "matched_fragments": 1148, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas chloritidismutans", "strain": "strain=AW-1", "accession": "GCA_000495915.1", "taxid": 203192, "species_taxid": 203192, "relation_to_type": "type", "validated": true, "ani": 88.8773, "matched_fragments": 1118, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas stutzeri", "strain": "strain=FDAARGOS_875", "accession": "GCA_016028655.1", "taxid": 316, "species_taxid": 316, "relation_to_type": "type", "validated": true, "ani": 87.6981, "matched_fragments": 1127, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas stutzeri", "strain": "strain=CGMCC 1.1803", "accession": "GCA_000219605.1", "taxid": 316, "species_taxid": 316, "relation_to_type": "type", "validated": true, "ani": 87.6958, "matched_fragments": 1124, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=FDAARGOS_877", "accession": "GCA_016028515.1", "taxid": 2968969, "species_taxid": 2968969, "relation_to_type": "type", "validated": true, "ani": 87.6266, "matched_fragments": 1107, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=DNSP21", "accession": "GCA_024448335.1", "taxid": 2968969, "species_taxid": 2968969, "relation_to_type": "type", "validated": true, "ani": 87.522, "matched_fragments": 1128, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=DNSP21", "accession": "GCA_002890935.1", "taxid": 2968969, "species_taxid": 2968969, "relation_to_type": "type", "validated": true, "ani": 87.4949, "matched_fragments": 1143, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremaustralis", "strain": "strain=14-3 substr. 14-3b", "accession": "GCA_000242115.2", "taxid": 359110, "species_taxid": 359110, "relation_to_type": "type", "validated": true, "ani": 78.9285, "matched_fragments": 497, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremaustralis", "strain": "strain=DSM 17835", "accession": "GCA_900102035.1", "taxid": 359110, "species_taxid": 359110, "relation_to_type": "type", "validated": true, "ani": 78.9221, "matched_fragments": 502, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremaustralis", "strain": "strain=DSM 17835", "accession": "GCA_007858235.1", "taxid": 359110, "species_taxid": 359110, "relation_to_type": "type", "validated": true, "ani": 78.9094, "matched_fragments": 501, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremaustralis", "strain": "", "accession": "GCA_900625045.1", "taxid": 359110, "species_taxid": 359110, "relation_to_type": "type", "validated": true, "ani": 78.858, "matched_fragments": 508, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium halophilum", "strain": "strain=DSM 17586", "accession": "GCA_003014615.1", "taxid": 267374, "species_taxid": 267374, "relation_to_type": "type", "validated": true, "ani": 75.859, "matched_fragments": 97, "total_fragments": 1331, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 78.79, "contamination": 2.08, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000327065.1", "gtdb_species": "s__Pseudomonas_A stutzeri_AE", "ani": 98.1698, "matched_fragments": 1277, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.70", "min_intra_species_ani": "97.56", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_003696315.1", "gtdb_species": "s__Pseudomonas_A songnenensis", "ani": 92.9997, "matched_fragments": 1222, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.36", "min_intra_species_ani": "98.32", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000661915.1", "gtdb_species": "s__Pseudomonas_A stutzeri_A", "ani": 91.0054, "matched_fragments": 1183, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.44", "min_intra_species_ani": "99.44", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013409135.1", "gtdb_species": "s__Pseudomonas_A kunmingensis_A", "ani": 89.2533, "matched_fragments": 1174, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 97.08, "mean_intra_species_ani": "97.66", "min_intra_species_ani": "97.10", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_014764705.1", "gtdb_species": "s__Pseudomonas_A sp002692525", "ani": 89.0844, "matched_fragments": 1129, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 97.0332, "mean_intra_species_ani": "98.20", "min_intra_species_ani": "97.14", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.83", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCF_003935375.1", "gtdb_species": "s__Pseudomonas_A xanthomarina_A", "ani": 89.0752, "matched_fragments": 1138, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 97.0614, "mean_intra_species_ani": "97.25", "min_intra_species_ani": "97.14", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_000935215.1", "gtdb_species": "s__Pseudomonas_A stutzeri_AD", "ani": 89.0741, "matched_fragments": 1035, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 96.8359, "mean_intra_species_ani": "97.48", "min_intra_species_ani": "96.93", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_007713455.1", "gtdb_species": "s__Pseudomonas_A sp007713455", "ani": 89.0649, "matched_fragments": 1135, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 97.0636, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002929225.1", "gtdb_species": "s__Pseudomonas_A stutzeri_U", 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88.6548, "matched_fragments": 1168, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003488145.1", "gtdb_species": "s__Pseudomonas_A sp003488145", "ani": 88.2266, "matched_fragments": 746, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 96.7169, "mean_intra_species_ani": "97.61", "min_intra_species_ani": "97.61", "mean_intra_species_af": "0.74", "min_intra_species_af": "0.74", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015291885.1", "gtdb_species": "s__Pseudomonas_A stutzeri_AC", "ani": 87.7721, "matched_fragments": 1120, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.94", "min_intra_species_ani": "97.56", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_003205815.1", "gtdb_species": "s__Pseudomonas_A sp003205815", "ani": 87.5844, "matched_fragments": 1156, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.18", "min_intra_species_ani": "96.58", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 27, "status": "-" }, { "accession": "GCA_002345575.1", "gtdb_species": "s__Pseudomonas_A stutzeri_S", "ani": 81.2695, "matched_fragments": 738, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002840155.1", "gtdb_species": "s__Pseudomonas_E sp002840155", "ani": 79.7007, "matched_fragments": 590, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900102035.1", "gtdb_species": "s__Pseudomonas_E extremaustralis", "ani": 78.9051, "matched_fragments": 504, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "98.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003014615.1", "gtdb_species": "s__Marinobacterium halophilum", "ani": 75.8719, "matched_fragments": 94, "total_fragments": 1331, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Nitrincolaceae;g__Marinobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.87", "min_intra_species_ani": "98.87", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" } ] }