{ "tc_result": [ { "organism_name": "Pseudomonas tumuqii", "strain": "strain=LAMW06", "accession": "GCA_013184545.1", "taxid": 2715755, "species_taxid": 2715755, "relation_to_type": "type", "validated": true, "ani": 92.2211, "matched_fragments": 1136, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas borbori", "strain": "strain=DSM 17834", "accession": "GCA_900115555.1", "taxid": 289003, "species_taxid": 289003, "relation_to_type": "type", "validated": true, "ani": 91.0595, "matched_fragments": 1125, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas benzenivorans", "strain": "strain=DSM 8628", "accession": "GCA_900100495.1", "taxid": 556533, "species_taxid": 556533, "relation_to_type": "type", "validated": true, "ani": 85.9261, "matched_fragments": 1056, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 84.5809, "matched_fragments": 907, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas taeanensis", "strain": "strain=MS-3", "accession": "GCA_000498575.2", "taxid": 574962, "species_taxid": 574962, "relation_to_type": "type", "validated": true, "ani": 83.6746, "matched_fragments": 993, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cuatrocienegasensis", "strain": "strain=CIP 109853", "accession": "GCA_900110925.1", "taxid": 543360, "species_taxid": 543360, "relation_to_type": "type", "validated": true, "ani": 82.3056, "matched_fragments": 826, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 82.2289, "matched_fragments": 767, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas peli", "strain": "strain=DSM 17833", "accession": "GCA_900099645.1", "taxid": 592361, "species_taxid": 592361, "relation_to_type": "type", "validated": true, "ani": 81.9143, "matched_fragments": 760, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas peli", "strain": "strain=DSM 17833", "accession": "GCA_012986145.1", "taxid": 592361, "species_taxid": 592361, "relation_to_type": "type", "validated": true, "ani": 81.8802, "matched_fragments": 773, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NCTC10367", "accession": "GCA_900455475.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 81.6707, "matched_fragments": 769, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 81.39, "matched_fragments": 715, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sagittaria", "strain": "strain=JCM 18195", "accession": "GCA_900115715.1", "taxid": 1135990, "species_taxid": 1135990, "relation_to_type": "type", "validated": true, "ani": 81.3024, "matched_fragments": 640, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas argentinensis", "strain": "strain=LMG 22563", "accession": "GCA_900113905.1", "taxid": 289370, "species_taxid": 289370, "relation_to_type": "type", "validated": true, "ani": 80.9679, "matched_fragments": 698, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas argentinensis", "strain": "strain=CCUG 50743", "accession": "GCA_008801645.1", "taxid": 289370, "species_taxid": 289370, "relation_to_type": "type", "validated": true, "ani": 80.9294, "matched_fragments": 712, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 80.8041, "matched_fragments": 574, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flavescens", "strain": "strain=LMG 18387", "accession": "GCA_900100535.1", "taxid": 29435, "species_taxid": 29435, "relation_to_type": "type", "validated": true, "ani": 80.7284, "matched_fragments": 691, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas flavescens", "strain": "strain=NBRC 103044", "accession": "GCA_002091575.1", "taxid": 29435, "species_taxid": 29435, "relation_to_type": "type", "validated": true, "ani": 80.6884, "matched_fragments": 685, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sichuanensis", "strain": "strain=WCHPs060039", "accession": "GCA_003231305.1", "taxid": 2213015, "species_taxid": 2213015, "relation_to_type": "type", "validated": true, "ani": 80.1479, "matched_fragments": 650, "total_fragments": 1531, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 65.1, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_013184545.1", "gtdb_species": "s__Pseudomonas_E sp013184545", "ani": 92.2366, "matched_fragments": 1135, "total_fragments": 1531, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900115555.1", "gtdb_species": "s__Pseudomonas_E borbori", "ani": 91.0301, "matched_fragments": 1127, "total_fragments": 1531, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002025205.1", "gtdb_species": "s__Pseudomonas_E sp002025205", "ani": 89.1524, "matched_fragments": 1098, "total_fragments": 1531, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900100495.1", "gtdb_species": "s__Pseudomonas_E benzenivorans", "ani": 85.8922, "matched_fragments": 1060, "total_fragments": 1531, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018398425.1", "gtdb_species": "s__Pseudomonas_E lalucatii", "ani": 84.5546, "matched_fragments": 910, "total_fragments": 1531, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.68", "min_intra_species_ani": "99.28", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_002354655.1", "gtdb_species": "s__Pseudomonas_E sp002354655", "ani": 84.2402, "matched_fragments": 953, "total_fragments": 1531, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007993865.1", "gtdb_species": "s__Pseudomonas_E sp007993865", "ani": 83.8278, "matched_fragments": 972, "total_fragments": 1531, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000498575.2", "gtdb_species": "s__Pseudomonas_E taeanensis", "ani": 83.6935, "matched_fragments": 991, "total_fragments": 1531, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002840155.1", "gtdb_species": "s__Pseudomonas_E sp002840155", "ani": 82.8427, "matched_fragments": 837, "total_fragments": 1531, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004327355.1", "gtdb_species": "s__Pseudomonas_E dryadis", "ani": 82.0562, "matched_fragments": 789, "total_fragments": 1531, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.58", "min_intra_species_ani": "99.16", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_018827205.1", "gtdb_species": "s__Pseudomonas_E sp018827205", "ani": 81.8055, "matched_fragments": 736, "total_fragments": 1531, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.54", "min_intra_species_ani": "99.51", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_016901015.1", "gtdb_species": "s__Pseudomonas_E sp016901015", "ani": 81.4268, "matched_fragments": 711, "total_fragments": 1531, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001839655.1", "gtdb_species": "s__Pseudomonas_E argentinensis_B", "ani": 81.2478, "matched_fragments": 713, "total_fragments": 1531, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000213805.1", "gtdb_species": "s__Pseudomonas_E fulva_B", "ani": 81.2047, "matched_fragments": 702, "total_fragments": 1531, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.53", "min_intra_species_ani": "96.12", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_002286785.1", "gtdb_species": "s__Pseudomonas_M sp002286785", "ani": 80.9162, "matched_fragments": 812, "total_fragments": 1531, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_M", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001579805.1", "gtdb_species": "s__Pseudomonas_E azotoformans_A", "ani": 79.1155, "matched_fragments": 587, "total_fragments": 1531, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.75", "min_intra_species_ani": "96.24", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.84", "num_clustered_genomes": 8, "status": "-" } ] }