{ "tc_result": [ { "organism_name": "Pseudomonas mendocina", "strain": "strain=NBRC 14162", "accession": "GCA_000813265.1", "taxid": 300, "species_taxid": 300, "relation_to_type": "suspected-type", "validated": true, "ani": 91.5369, "matched_fragments": 1251, "total_fragments": 1480, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mendocina", "strain": "strain=NCTC10897", "accession": "GCA_900636545.1", "taxid": 300, "species_taxid": 300, "relation_to_type": "suspected-type", "validated": true, "ani": 91.4883, "matched_fragments": 1275, "total_fragments": 1480, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sediminis", "strain": "strain=PI11", "accession": "GCA_002741105.1", "taxid": 1691904, "species_taxid": 1691904, "relation_to_type": "type", "validated": true, "ani": 89.4542, "matched_fragments": 1181, "total_fragments": 1480, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yangonensis", "strain": "strain=MY50", "accession": "GCA_009932725.1", "taxid": 2579922, "species_taxid": 2579922, "relation_to_type": "type", "validated": true, "ani": 89.2415, "matched_fragments": 1147, "total_fragments": 1480, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas composti", "strain": "strain=CCUG 59231", "accession": "GCA_900115475.1", "taxid": 658457, "species_taxid": 658457, "relation_to_type": "type", "validated": true, "ani": 88.9774, "matched_fragments": 1240, "total_fragments": 1480, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sihuiensis", "strain": "strain=KCTC 32246", "accession": "GCA_900106015.1", "taxid": 1274359, "species_taxid": 1274359, "relation_to_type": "type", "validated": true, "ani": 88.688, "matched_fragments": 1154, "total_fragments": 1480, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chengduensis", "strain": "strain=DSM 26382", "accession": "GCA_012986985.1", "taxid": 489632, "species_taxid": 489632, "relation_to_type": "type", "validated": true, "ani": 88.6353, "matched_fragments": 1171, "total_fragments": 1480, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": "GCA_900104265.1", "taxid": 1198456, "species_taxid": 1198456, "relation_to_type": "type", "validated": true, "ani": 88.6172, "matched_fragments": 1149, "total_fragments": 1480, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chengduensis", "strain": "strain=MBR", "accession": "GCA_017905455.1", "taxid": 489632, "species_taxid": 489632, "relation_to_type": "type", "validated": true, "ani": 88.6083, "matched_fragments": 1163, "total_fragments": 1480, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas toyotomiensis", "strain": "strain=DSM 26169", "accession": "GCA_002741095.1", "taxid": 554344, "species_taxid": 554344, "relation_to_type": "type", "validated": true, "ani": 88.5065, "matched_fragments": 1178, "total_fragments": 1480, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas toyotomiensis", "strain": "strain=JCM 15604", "accession": "GCA_900115695.1", "taxid": 554344, "species_taxid": 554344, "relation_to_type": "type", "validated": true, "ani": 88.492, "matched_fragments": 1173, "total_fragments": 1480, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaliphila", "strain": "strain=JCM 10630", "accession": "GCA_900101755.1", "taxid": 101564, "species_taxid": 101564, "relation_to_type": "type", "validated": true, "ani": 88.4388, "matched_fragments": 1164, "total_fragments": 1480, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaliphila", "strain": "strain=NBRC 102411", "accession": "GCA_002091495.1", "taxid": 101564, "species_taxid": 101564, "relation_to_type": "type", "validated": true, "ani": 88.3325, "matched_fragments": 1178, "total_fragments": 1480, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oleovorans subsp. oleovorans", "strain": "strain=NBRC 13583", "accession": "GCA_002091815.1", "taxid": 1218129, "species_taxid": 301, "relation_to_type": "type", "validated": true, "ani": 88.244, "matched_fragments": 1000, "total_fragments": 1480, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 87.1621, "matched_fragments": 1081, "total_fragments": 1480, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 82.5483, "matched_fragments": 811, "total_fragments": 1480, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 81.4258, "matched_fragments": 772, "total_fragments": 1480, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 50.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900636545.1", "gtdb_species": "s__Pseudomonas_E mendocina", "ani": 91.4749, "matched_fragments": 1276, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.91", "min_intra_species_ani": "97.19", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_016008875.1", "gtdb_species": "s__Pseudomonas_E sp002439135", "ani": 89.7543, "matched_fragments": 1203, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.91", "min_intra_species_ani": "96.75", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_007049795.1", "gtdb_species": "s__Pseudomonas_E mendocina_D", "ani": 89.5589, "matched_fragments": 1109, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.17", "min_intra_species_ani": "96.47", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.84", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_002741105.1", "gtdb_species": "s__Pseudomonas_E sediminis", "ani": 89.4542, "matched_fragments": 1181, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.01", "min_intra_species_ani": "95.51", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000418555.1", "gtdb_species": "s__Pseudomonas_E sp000418555", "ani": 89.2499, "matched_fragments": 1169, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009932725.1", "gtdb_species": "s__Pseudomonas_E sp009932725", "ani": 89.2415, "matched_fragments": 1147, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.40", "min_intra_species_ani": "98.35", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900115475.1", "gtdb_species": "s__Pseudomonas_E composti", "ani": 88.9889, "matched_fragments": 1239, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.90", "min_intra_species_ani": "97.79", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_900106015.1", "gtdb_species": "s__Pseudomonas_E sihuiensis", "ani": 88.7046, "matched_fragments": 1153, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 96.7402, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900104265.1", "gtdb_species": "s__Pseudomonas_E guguanensis", "ani": 88.6172, "matched_fragments": 1149, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.13", "min_intra_species_ani": "97.13", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002803095.1", "gtdb_species": "s__Pseudomonas_E sp002803095", "ani": 88.5635, "matched_fragments": 1144, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.6432, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900115695.1", "gtdb_species": "s__Pseudomonas_E toyotomiensis", "ani": 88.4974, "matched_fragments": 1173, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.1942, "mean_intra_species_ani": "98.17", "min_intra_species_ani": "97.23", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_900101755.1", "gtdb_species": "s__Pseudomonas_E alcaliphila", "ani": 88.4468, "matched_fragments": 1163, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "97.49", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002197815.1", "gtdb_species": "s__Pseudomonas_E oleovorans", "ani": 88.2431, "matched_fragments": 1002, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 96.52, "mean_intra_species_ani": "97.92", "min_intra_species_ani": "96.68", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.80", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCF_003052605.1", "gtdb_species": "s__Pseudomonas_E indoloxydans", "ani": 88.1707, "matched_fragments": 983, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 96.52, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001567565.1", "gtdb_species": "s__Pseudomonas_E composti_A", "ani": 88.1282, "matched_fragments": 1150, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902506495.1", "gtdb_species": "s__Pseudomonas_E sp902506495", "ani": 88.0596, "matched_fragments": 1189, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.72", "min_intra_species_ani": "95.94", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000016565.1", "gtdb_species": "s__Pseudomonas_E mendocina_A", "ani": 87.152, "matched_fragments": 1112, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "97.37", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_902506535.1", "gtdb_species": "s__Pseudomonas_E sp902506535", "ani": 84.5741, "matched_fragments": 932, "total_fragments": 1480, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }