{ "tc_result": [ { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 86.7589, "matched_fragments": 1254, "total_fragments": 1685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 86.6923, "matched_fragments": 1193, "total_fragments": 1685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas plecoglossicida", "strain": "strain=DSM 15088", "accession": "GCA_000688275.1", "taxid": 70775, "species_taxid": 70775, "relation_to_type": "suspected-type", "validated": true, "ani": 86.3127, "matched_fragments": 1205, "total_fragments": 1685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas plecoglossicida", "strain": "strain=NBRC 103162", "accession": "GCA_000730665.1", "taxid": 70775, "species_taxid": 70775, "relation_to_type": "suspected-type", "validated": true, "ani": 86.3091, "matched_fragments": 1195, "total_fragments": 1685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_021602465.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 86.1206, "matched_fragments": 1245, "total_fragments": 1685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_013373915.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 86.113, "matched_fragments": 1215, "total_fragments": 1685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas anuradhapurensis", "strain": "strain=RD8MR3", "accession": "GCA_014269225.2", "taxid": 485870, "species_taxid": 485870, "relation_to_type": "type", "validated": true, "ani": 86.0143, "matched_fragments": 1203, "total_fragments": 1685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas muyukensis", "strain": "strain=COW39", "accession": "GCA_019139535.1", "taxid": 2842357, "species_taxid": 2842357, "relation_to_type": "type", "validated": true, "ani": 85.8264, "matched_fragments": 1198, "total_fragments": 1685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas xantholysinigenes", "strain": "strain=RW9S1A", "accession": "GCA_014268885.2", "taxid": 2745490, "species_taxid": 2745490, "relation_to_type": "type", "validated": true, "ani": 85.7817, "matched_fragments": 1149, "total_fragments": 1685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzicola", "strain": "strain=RD9SR1", "accession": "GCA_014269185.2", "taxid": 485876, "species_taxid": 485876, "relation_to_type": "type", "validated": true, "ani": 85.7592, "matched_fragments": 1192, "total_fragments": 1685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mosselii", "strain": "strain=DSM 17497", "accession": "GCA_019823065.1", "taxid": 78327, "species_taxid": 78327, "relation_to_type": "type", "validated": true, "ani": 85.5719, "matched_fragments": 1204, "total_fragments": 1685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas putida", "strain": "strain=IPO3752", "accession": "GCA_013387005.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 85.5257, "matched_fragments": 1236, "total_fragments": 1685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas monteilii", "strain": "strain=NBRC 103158", "accession": "GCA_000730605.1", "taxid": 76759, "species_taxid": 76759, "relation_to_type": "type", "validated": true, "ani": 85.4944, "matched_fragments": 1211, "total_fragments": 1685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas monteilii", "strain": "strain=DSM 14164", "accession": "GCA_000621245.1", "taxid": 76759, "species_taxid": 76759, "relation_to_type": "type", "validated": true, "ani": 85.492, "matched_fragments": 1233, "total_fragments": 1685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kermanshahensis", "strain": "strain=SWRI100", "accession": "GCA_014269205.2", "taxid": 2745482, "species_taxid": 2745482, "relation_to_type": "type", "validated": true, "ani": 85.4847, "matched_fragments": 1237, "total_fragments": 1685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas maumuensis", "strain": "strain=COW77", "accession": "GCA_019139675.1", "taxid": 2842354, "species_taxid": 2842354, "relation_to_type": "type", "validated": true, "ani": 85.4689, "matched_fragments": 1172, "total_fragments": 1685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas ceruminis", "strain": "strain=BML-PP028", "accession": "GCA_013373895.1", "taxid": 2740516, "species_taxid": 2740516, "relation_to_type": "type", "validated": true, "ani": 85.3376, "matched_fragments": 1192, "total_fragments": 1685, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 76.52, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004357765.1", "gtdb_species": "s__Pseudomonas_E putida_U", "ani": 99.2788, "matched_fragments": 1533, "total_fragments": 1685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "99.43", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_005080685.1", "gtdb_species": "s__Pseudomonas_E putida_V", "ani": 89.8763, "matched_fragments": 1431, "total_fragments": 1685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016648105.1", "gtdb_species": "s__Pseudomonas_E sp016648105", "ani": 88.7918, "matched_fragments": 1360, "total_fragments": 1685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002112505.1", "gtdb_species": "s__Pseudomonas_E sp002112505", "ani": 86.5546, "matched_fragments": 1290, "total_fragments": 1685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000730665.1", "gtdb_species": "s__Pseudomonas_E plecoglossicida", "ani": 86.3109, "matched_fragments": 1195, "total_fragments": 1685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.81", "min_intra_species_ani": "99.74", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_003331055.1", "gtdb_species": "s__Pseudomonas_E sp003331055", "ani": 86.2627, "matched_fragments": 1162, "total_fragments": 1685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000282535.1", "gtdb_species": "s__Pseudomonas_E sp000282535", "ani": 86.2197, "matched_fragments": 1124, "total_fragments": 1685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001642705.1", "gtdb_species": "s__Pseudomonas_E sp001642705", "ani": 86.1884, "matched_fragments": 1217, "total_fragments": 1685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.26", "min_intra_species_ani": "95.01", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000935045.1", "gtdb_species": "s__Pseudomonas_E sp000935045", "ani": 86.188, "matched_fragments": 1227, "total_fragments": 1685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009932335.1", "gtdb_species": "s__Pseudomonas_E asiatica", "ani": 86.0482, "matched_fragments": 1254, "total_fragments": 1685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0481, "mean_intra_species_ani": "97.98", "min_intra_species_ani": "96.05", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.79", "num_clustered_genomes": 58, "status": "-" }, { "accession": "GCA_003428805.1", "gtdb_species": "s__Pseudomonas_E sp003428805", "ani": 86.0347, "matched_fragments": 1263, "total_fragments": 1685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.29", "min_intra_species_ani": "96.05", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", 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"num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011752525.1", "gtdb_species": "s__Pseudomonas_E sp011752525", "ani": 85.7002, "matched_fragments": 1109, "total_fragments": 1685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004519305.1", "gtdb_species": "s__Pseudomonas_E sp004519305", "ani": 85.5563, "matched_fragments": 1144, "total_fragments": 1685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014268975.1", "gtdb_species": "s__Pseudomonas_E sp014268975", "ani": 85.0519, "matched_fragments": 1178, "total_fragments": 1685, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "99.15", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" } ] }