{ "tc_result": [ { "organism_name": "Pseudomonas fulva", "strain": "strain=DSM 17717", "accession": "GCA_000621265.1", "taxid": 47880, "species_taxid": 47880, "relation_to_type": "type", "validated": true, "ani": 99.4784, "matched_fragments": 1336, "total_fragments": 1485, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas fulva", "strain": "strain=NBRC 16637", "accession": "GCA_000730565.1", "taxid": 47880, "species_taxid": 47880, "relation_to_type": "type", "validated": true, "ani": 99.4768, "matched_fragments": 1334, "total_fragments": 1485, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas monteilii", "strain": "strain=DSM 14164", "accession": "GCA_000621245.1", "taxid": 76759, "species_taxid": 76759, "relation_to_type": "type", "validated": true, "ani": 84.5917, "matched_fragments": 1087, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas monteilii", "strain": "strain=NBRC 103158", "accession": "GCA_000730605.1", "taxid": 76759, "species_taxid": 76759, "relation_to_type": "type", "validated": true, "ani": 84.5557, "matched_fragments": 1078, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 84.5497, "matched_fragments": 1037, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 84.5152, "matched_fragments": 983, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas putida", "strain": "strain=ATCC 12633", "accession": "GCA_024508115.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 84.4712, "matched_fragments": 1068, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas putida", "strain": "strain=NCTC10936", "accession": "GCA_900455645.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 84.4309, "matched_fragments": 1085, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas putida", "strain": "strain=IPO3752", "accession": "GCA_013387005.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 84.4217, "matched_fragments": 1064, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas putida", "strain": "strain=NBRC 14164", "accession": "GCA_000412675.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 84.3573, "matched_fragments": 1082, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas parafulva", "strain": "strain=DSM 17004", "accession": "GCA_000425765.1", "taxid": 157782, "species_taxid": 157782, "relation_to_type": "suspected-type", "validated": true, "ani": 84.3447, "matched_fragments": 1107, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas juntendi", "strain": "strain=BML3", "accession": "GCA_009932375.1", "taxid": 2666183, "species_taxid": 2666183, "relation_to_type": "type", "validated": true, "ani": 84.0992, "matched_fragments": 985, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas capeferrum", "strain": "strain=WCS358", "accession": "GCA_022548835.1", "taxid": 1495066, "species_taxid": 1495066, "relation_to_type": "type", "validated": true, "ani": 83.9604, "matched_fragments": 995, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas muyukensis", "strain": "strain=COW39", "accession": "GCA_019139535.1", "taxid": 2842357, "species_taxid": 2842357, "relation_to_type": "type", "validated": true, "ani": 83.8665, "matched_fragments": 993, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sichuanensis", "strain": "strain=WCHPs060039", "accession": "GCA_003231305.1", "taxid": 2213015, "species_taxid": 2213015, "relation_to_type": "type", "validated": true, "ani": 83.7261, "matched_fragments": 1015, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kermanshahensis", "strain": "strain=SWRI100", "accession": "GCA_014269205.2", "taxid": 2745482, "species_taxid": 2745482, "relation_to_type": "type", "validated": true, "ani": 83.6972, "matched_fragments": 1057, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas ceruminis", "strain": "strain=BML-PP028", "accession": "GCA_021602025.1", "taxid": 2740516, "species_taxid": 2740516, "relation_to_type": "type", "validated": true, "ani": 83.6562, "matched_fragments": 1028, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas ceruminis", "strain": "strain=BML-PP028", "accession": "GCA_013373895.1", "taxid": 2740516, "species_taxid": 2740516, "relation_to_type": "type", "validated": true, "ani": 83.6361, "matched_fragments": 1030, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fakonensis", "strain": "strain=COW40", "accession": "GCA_019139895.1", "taxid": 2842355, "species_taxid": 2842355, "relation_to_type": "type", "validated": true, "ani": 83.581, "matched_fragments": 1026, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas xantholysinigenes", "strain": "strain=RW9S1A", "accession": "GCA_014268885.2", "taxid": 2745490, "species_taxid": 2745490, "relation_to_type": "type", "validated": true, "ani": 83.5137, "matched_fragments": 977, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000730565.1", "gtdb_species": "s__Pseudomonas_E fulva", "ani": 99.4768, "matched_fragments": 1334, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.00", "min_intra_species_ani": "95.45", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 89, "status": "conclusive" }, { "accession": "GCF_002021815.1", "gtdb_species": "s__Pseudomonas_E parafulva_B", "ani": 93.9294, "matched_fragments": 1291, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "97.25", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 23, "status": "-" }, { "accession": "GCF_003331055.1", "gtdb_species": "s__Pseudomonas_E sp003331055", "ani": 84.7642, "matched_fragments": 1042, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001642705.1", "gtdb_species": "s__Pseudomonas_E sp001642705", "ani": 84.6016, "matched_fragments": 1060, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.26", "min_intra_species_ani": "95.01", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000730605.1", "gtdb_species": "s__Pseudomonas_E monteilii", "ani": 84.5659, "matched_fragments": 1076, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.80", "min_intra_species_ani": "95.46", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.79", "num_clustered_genomes": 45, "status": "-" }, { "accession": "GCF_000935045.1", "gtdb_species": "s__Pseudomonas_E sp000935045", "ani": 84.5498, "matched_fragments": 1057, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013373935.1", "gtdb_species": "s__Pseudomonas_E sp002438125", "ani": 84.5085, "matched_fragments": 984, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "98.14", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015680405.1", "gtdb_species": "s__Pseudomonas_E pudica", "ani": 84.4405, "matched_fragments": 1061, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0481, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "95.23", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_002165135.1", "gtdb_species": "s__Pseudomonas_E sp002165135", "ani": 84.4325, "matched_fragments": 1044, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000412675.1", "gtdb_species": "s__Pseudomonas_E putida", "ani": 84.3482, "matched_fragments": 1083, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "97.45", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.83", "num_clustered_genomes": 24, "status": "-" }, { "accession": "GCF_016658545.1", "gtdb_species": "s__Pseudomonas_E sp016658545", "ani": 84.3367, "matched_fragments": 1046, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017744435.1", "gtdb_species": "s__Pseudomonas_E sp017744435", "ani": 84.2275, "matched_fragments": 1009, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002112505.1", "gtdb_species": "s__Pseudomonas_E sp002112505", "ani": 84.1496, "matched_fragments": 1072, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_009391885.1", "gtdb_species": "s__Pseudomonas_E sp009391885", "ani": 84.1264, "matched_fragments": 1024, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009932375.1", "gtdb_species": "s__Pseudomonas_E juntendi", "ani": 84.0845, "matched_fragments": 987, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.06", "min_intra_species_ani": "97.13", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.79", "num_clustered_genomes": 41, "status": "-" }, { "accession": "GCF_003671955.1", "gtdb_species": "s__Pseudomonas_E hunanensis", "ani": 83.9284, "matched_fragments": 1074, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.33", "min_intra_species_ani": "95.26", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.79", "num_clustered_genomes": 88, "status": "-" }, { "accession": "GCF_016648105.1", "gtdb_species": "s__Pseudomonas_E sp016648105", "ani": 83.9074, "matched_fragments": 1001, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019139535.1", "gtdb_species": "s__Pseudomonas_E sp019139535", "ani": 83.8721, "matched_fragments": 993, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003231305.1", "gtdb_species": "s__Pseudomonas_E sichuanensis", "ani": 83.735, "matched_fragments": 1014, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.11", "min_intra_species_ani": "95.79", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_004519305.1", "gtdb_species": "s__Pseudomonas_E sp004519305", "ani": 83.456, "matched_fragments": 981, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004357765.1", "gtdb_species": "s__Pseudomonas_E putida_U", "ani": 83.3831, "matched_fragments": 960, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "99.43", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" } ] }