{ "tc_result": [ { "organism_name": "Pseudomonas monteilii", "strain": "strain=DSM 14164", "accession": "GCA_000621245.1", "taxid": 76759, "species_taxid": 76759, "relation_to_type": "type", "validated": true, "ani": 99.5119, "matched_fragments": 748, "total_fragments": 758, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas monteilii", "strain": "strain=NBRC 103158", "accession": "GCA_000730605.1", "taxid": 76759, "species_taxid": 76759, "relation_to_type": "type", "validated": true, "ani": 99.5113, "matched_fragments": 742, "total_fragments": 758, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas putida", "strain": "strain=IPO3752", "accession": "GCA_013387005.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 91.8297, "matched_fragments": 696, "total_fragments": 758, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas putida", "strain": "strain=ATCC 12633", "accession": "GCA_024508115.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 91.7865, "matched_fragments": 708, "total_fragments": 758, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas putida", "strain": "strain=NCTC10936", "accession": "GCA_900455645.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 91.7703, "matched_fragments": 716, "total_fragments": 758, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas inefficax", "strain": "strain=JV551A3", "accession": "GCA_900277125.1", "taxid": 2078786, "species_taxid": 2078786, "relation_to_type": "type", "validated": true, "ani": 91.1408, "matched_fragments": 709, "total_fragments": 758, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas anuradhapurensis", "strain": "strain=RD8MR3", "accession": "GCA_014269225.2", "taxid": 485870, "species_taxid": 485870, "relation_to_type": "type", "validated": true, "ani": 90.1885, "matched_fragments": 704, "total_fragments": 758, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzicola", "strain": "strain=RD9SR1", "accession": "GCA_014269185.2", "taxid": 485876, "species_taxid": 485876, "relation_to_type": "type", "validated": true, "ani": 90.0944, "matched_fragments": 688, "total_fragments": 758, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 88.9959, "matched_fragments": 671, "total_fragments": 758, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 88.9712, "matched_fragments": 653, "total_fragments": 758, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas capeferrum", "strain": "strain=WCS358", "accession": "GCA_022548835.1", "taxid": 1495066, "species_taxid": 1495066, "relation_to_type": "type", "validated": true, "ani": 88.7597, "matched_fragments": 663, "total_fragments": 758, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kermanshahensis", "strain": "strain=SWRI100", "accession": "GCA_014269205.2", "taxid": 2745482, "species_taxid": 2745482, "relation_to_type": "type", "validated": true, "ani": 88.7347, "matched_fragments": 681, "total_fragments": 758, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_021602465.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 88.5493, "matched_fragments": 676, "total_fragments": 758, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_013373915.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 88.462, "matched_fragments": 665, "total_fragments": 758, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas parafulva", "strain": "strain=DSM 17004", "accession": "GCA_000425765.1", "taxid": 157782, "species_taxid": 157782, "relation_to_type": "suspected-type", "validated": true, "ani": 86.9686, "matched_fragments": 632, "total_fragments": 758, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas parafulva", "strain": "strain=NBRC 16636", "accession": "GCA_000730645.1", "taxid": 157782, "species_taxid": 157782, "relation_to_type": "suspected-type", "validated": true, "ani": 86.9625, "matched_fragments": 622, "total_fragments": 758, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 66.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000730605.1", "gtdb_species": "s__Pseudomonas_E monteilii", "ani": 99.5113, "matched_fragments": 742, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.80", "min_intra_species_ani": "95.46", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.79", "num_clustered_genomes": 45, "status": "conclusive" }, { "accession": "GCF_001642705.1", "gtdb_species": "s__Pseudomonas_E sp001642705", "ani": 91.5969, "matched_fragments": 706, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.26", "min_intra_species_ani": "95.01", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013393325.1", "gtdb_species": "s__Pseudomonas_E putida_P", "ani": 91.5773, "matched_fragments": 721, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.35", "min_intra_species_ani": "99.27", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.82", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_000935045.1", "gtdb_species": "s__Pseudomonas_E sp000935045", "ani": 91.2932, "matched_fragments": 693, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016658545.1", "gtdb_species": "s__Pseudomonas_E sp016658545", "ani": 91.2474, "matched_fragments": 688, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009932335.1", "gtdb_species": "s__Pseudomonas_E asiatica", "ani": 91.1577, "matched_fragments": 714, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0481, "mean_intra_species_ani": "97.98", "min_intra_species_ani": "96.05", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.79", "num_clustered_genomes": 58, "status": "-" }, { "accession": "GCF_900277125.1", "gtdb_species": "s__Pseudomonas_E inefficax", "ani": 91.1408, "matched_fragments": 709, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.83", "min_intra_species_ani": "97.08", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_015680405.1", "gtdb_species": "s__Pseudomonas_E pudica", "ani": 91.128, "matched_fragments": 699, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0481, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "95.23", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_002113165.1", "gtdb_species": "s__Pseudomonas_E sp002113165", "ani": 91.0165, "matched_fragments": 705, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002165135.1", "gtdb_species": "s__Pseudomonas_E sp002165135", "ani": 90.9926, "matched_fragments": 696, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003331055.1", "gtdb_species": "s__Pseudomonas_E sp003331055", "ani": 90.7428, "matched_fragments": 670, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003205205.1", "gtdb_species": "s__Pseudomonas_E sp003205205", "ani": 90.5348, "matched_fragments": 687, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013179515.1", "gtdb_species": "s__Pseudomonas_E sp013179515", "ani": 90.1363, "matched_fragments": 625, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.93", "min_intra_species_ani": "98.93", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003097235.1", "gtdb_species": "s__Pseudomonas_E sp003097235", "ani": 89.0645, "matched_fragments": 693, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009391885.1", "gtdb_species": "s__Pseudomonas_E sp009391885", "ani": 88.9881, "matched_fragments": 681, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005080685.1", "gtdb_species": "s__Pseudomonas_E putida_V", "ani": 87.7405, "matched_fragments": 672, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000621225.1", "gtdb_species": "s__Pseudomonas_E mosselii", "ani": 87.1571, "matched_fragments": 663, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "97.48", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_003231275.1", "gtdb_species": "s__Pseudomonas_E huaxiensis", "ani": 84.0981, "matched_fragments": 606, "total_fragments": 758, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.93", "min_intra_species_ani": "95.93", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" } ] }