{ "tc_result": [ { "organism_name": "Pseudomonas putida", "strain": "strain=IPO3752", "accession": "GCA_013387005.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 90.8782, "matched_fragments": 1315, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas putida", "strain": "strain=NBRC 14164", "accession": "GCA_000412675.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 90.8682, "matched_fragments": 1327, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas putida", "strain": "strain=NCTC10936", "accession": "GCA_900455645.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 90.8592, "matched_fragments": 1338, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas putida", "strain": "strain=ATCC 12633", "accession": "GCA_024508115.1", "taxid": 303, "species_taxid": 303, "relation_to_type": "suspected-type", "validated": true, "ani": 90.774, "matched_fragments": 1346, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas monteilii", "strain": "strain=NBRC 103158", "accession": "GCA_000730605.1", "taxid": 76759, "species_taxid": 76759, "relation_to_type": "type", "validated": true, "ani": 90.1857, "matched_fragments": 1283, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas monteilii", "strain": "strain=DSM 14164", "accession": "GCA_000621245.1", "taxid": 76759, "species_taxid": 76759, "relation_to_type": "type", "validated": true, "ani": 90.1659, "matched_fragments": 1314, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas inefficax", "strain": "strain=JV551A3", "accession": "GCA_900277125.1", "taxid": 2078786, "species_taxid": 2078786, "relation_to_type": "type", "validated": true, "ani": 89.7763, "matched_fragments": 1270, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas anuradhapurensis", "strain": "strain=RD8MR3", "accession": "GCA_014269225.2", "taxid": 485870, "species_taxid": 485870, "relation_to_type": "type", "validated": true, "ani": 88.9431, "matched_fragments": 1177, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas juntendi", "strain": "strain=BML3", "accession": "GCA_009932375.1", "taxid": 2666183, "species_taxid": 2666183, "relation_to_type": "type", "validated": true, "ani": 88.2259, "matched_fragments": 1072, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas capeferrum", "strain": "strain=WCS358", "accession": "GCA_022548835.1", "taxid": 1495066, "species_taxid": 1495066, "relation_to_type": "type", "validated": true, "ani": 87.6475, "matched_fragments": 1140, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 87.5239, "matched_fragments": 1202, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 87.5186, "matched_fragments": 1148, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_021602465.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 87.2098, "matched_fragments": 1177, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_013373915.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 87.0776, "matched_fragments": 1156, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella woolbedingensis", "strain": "strain=DSM 27399", "accession": "GCA_003602095.1", "taxid": 1510574, "species_taxid": 1510574, "relation_to_type": "type", "validated": true, "ani": 75.9033, "matched_fragments": 52, "total_fragments": 1689, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013393325.1", "gtdb_species": "s__Pseudomonas_E putida_P", "ani": 99.1656, "matched_fragments": 1456, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.35", "min_intra_species_ani": "99.27", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.82", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCF_000708715.2", "gtdb_species": "s__Pseudomonas_E putida_R", "ani": 91.1227, "matched_fragments": 1326, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.68", "min_intra_species_ani": "95.68", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000498395.2", "gtdb_species": "s__Pseudomonas_E putida_Q", "ani": 90.8937, 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1283, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0481, "mean_intra_species_ani": "97.98", "min_intra_species_ani": "96.05", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.79", "num_clustered_genomes": 58, "status": "-" }, { "accession": "GCF_002165135.1", "gtdb_species": "s__Pseudomonas_E sp002165135", "ani": 89.8509, "matched_fragments": 1184, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003205205.1", "gtdb_species": "s__Pseudomonas_E sp003205205", "ani": 89.5724, "matched_fragments": 1198, 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000621225.1", "gtdb_species": "s__Pseudomonas_E mosselii", "ani": 86.2225, "matched_fragments": 1146, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "97.48", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_000730645.1", "gtdb_species": "s__Pseudomonas_E parafulva", "ani": 85.6906, "matched_fragments": 1030, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.15", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_003231275.1", "gtdb_species": "s__Pseudomonas_E huaxiensis", "ani": 82.9743, "matched_fragments": 998, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.93", "min_intra_species_ani": "95.93", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_006226595.1", "gtdb_species": "s__M1803 sp006226595", "ani": 74.8007, "matched_fragments": 54, "total_fragments": 1689, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__GCA-2862545;g__M1803", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }