{ "tc_result": [ { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=NBRC 14161", "accession": "GCA_001591205.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 91.2368, "matched_fragments": 1205, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=NCTC10257", "accession": "GCA_900186865.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 91.236, "matched_fragments": 1249, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=ATCC 13637", "accession": "GCA_001997185.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 91.2349, "matched_fragments": 1203, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=MTCC 434", "accession": "GCA_000597745.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 91.116, "matched_fragments": 1129, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas pavanii", "strain": "strain=DSM 25135", "accession": "GCA_001431565.1", "taxid": 487698, "species_taxid": 487698, "relation_to_type": "type", "validated": true, "ani": 90.9003, "matched_fragments": 1125, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas sepilia", "strain": "strain=SM16975", "accession": "GCA_003244875.1", "taxid": 2860290, "species_taxid": 2860290, "relation_to_type": "type", "validated": true, "ani": 90.8739, "matched_fragments": 1154, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pseudomonas] hibiscicola", "strain": "strain=ATCC 19867", "accession": "GCA_000382065.1", "taxid": 86189, "species_taxid": 86189, "relation_to_type": "type", "validated": true, "ani": 90.862, "matched_fragments": 1192, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas pavanii", "strain": "strain=LMG 25348", "accession": "GCA_900101175.1", "taxid": 487698, "species_taxid": 487698, "relation_to_type": "type", "validated": true, "ani": 90.8344, "matched_fragments": 1196, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas pennii", "strain": "strain=Sa5BUN4", "accession": "GCA_014836545.1", "taxid": 2762239, "species_taxid": 2762239, "relation_to_type": "type", "validated": true, "ani": 84.5373, "matched_fragments": 864, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas acidaminiphila", "strain": "strain=DSM 13117", "accession": "GCA_024221815.1", "taxid": 128780, "species_taxid": 128780, "relation_to_type": "type", "validated": true, "ani": 83.7238, "matched_fragments": 790, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas pictorum", "strain": "strain=JCM 9942", "accession": "GCA_001310775.1", "taxid": 86184, "species_taxid": 86184, "relation_to_type": "type", "validated": true, "ani": 83.134, "matched_fragments": 485, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas indica", "strain": "strain=PPL560", "accession": "GCA_022669045.1", "taxid": 2912242, "species_taxid": 2912242, "relation_to_type": "type", "validated": true, "ani": 82.5356, "matched_fragments": 819, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas translucens", "strain": "strain=ATCC 19319", "accession": "GCA_020880735.1", "taxid": 343, "species_taxid": 343, "relation_to_type": "type", "validated": true, "ani": 82.4489, "matched_fragments": 669, "total_fragments": 1546, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001274595.1", "gtdb_species": "s__Stenotrophomonas maltophilia_AJ", "ani": 96.226, "matched_fragments": 1334, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.15", "min_intra_species_ani": "96.26", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCF_003205835.1", "gtdb_species": "s__Stenotrophomonas maltophilia_AL", "ani": 91.681, "matched_fragments": 1263, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.59", "min_intra_species_ani": "98.33", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_002192255.1", "gtdb_species": "s__Stenotrophomonas sp002192255", "ani": 91.6313, "matched_fragments": 1210, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.64", "min_intra_species_ani": "95.45", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_013464915.1", "gtdb_species": "s__Stenotrophomonas maltophilia_AT", "ani": 91.5013, "matched_fragments": 1200, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.65", "min_intra_species_ani": "98.65", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.93", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003970865.1", "gtdb_species": "s__Stenotrophomonas maltophilia_AR", "ani": 91.4271, "matched_fragments": 1179, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002138415.1", "gtdb_species": "s__Stenotrophomonas maltophilia_G", "ani": 91.4138, "matched_fragments": 1242, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.93", "min_intra_species_ani": "95.59", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_002799245.1", "gtdb_species": "s__Stenotrophomonas maltophilia_S", "ani": 91.4003, "matched_fragments": 1225, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004346925.1", "gtdb_species": "s__Stenotrophomonas maltophilia_A", "ani": 91.3931, "matched_fragments": 1230, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.29", "min_intra_species_ani": "95.44", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 41, "status": "-" }, { "accession": "GCF_006970445.1", "gtdb_species": "s__Stenotrophomonas maltophilia_AU", "ani": 91.366, "matched_fragments": 1235, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002799155.1", "gtdb_species": "s__Stenotrophomonas maltophilia_R", "ani": 91.3357, "matched_fragments": 1216, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900186865.1", "gtdb_species": "s__Stenotrophomonas maltophilia", "ani": 91.2438, "matched_fragments": 1249, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.99", "min_intra_species_ani": "97.31", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 234, "status": "-" }, { "accession": "GCF_002799165.1", "gtdb_species": "s__Stenotrophomonas maltophilia_Q", "ani": 91.2152, "matched_fragments": 1235, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.69", "min_intra_species_ani": "95.30", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.83", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_001431625.1", "gtdb_species": "s__Stenotrophomonas geniculata", "ani": 91.0272, "matched_fragments": 1191, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.51", "min_intra_species_ani": "96.26", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.77", "num_clustered_genomes": 45, "status": "-" }, { "accession": "GCF_013464485.1", "gtdb_species": "s__Stenotrophomonas maltophilia_AW", "ani": 90.9216, "matched_fragments": 1225, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003028475.1", "gtdb_species": "s__Stenotrophomonas sp003028475", "ani": 90.8444, "matched_fragments": 1219, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Stenotrophomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "96.55", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" } ] }