{
    "type": "genome",
    "identifier": "GCA_000205985.2",
    "organism": "uncultured Candidatus Thioglobus sp.",
    "title": "uncultured Candidatus Thioglobus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of British Columbia, Canada",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_000205985.2",
        "bioproject": "PRJNA34785",
        "biosample": "SAMN02954310",
        "wgs_master": "ACSG00000000.1",
        "refseq_category": "na",
        "taxid": "655186",
        "species_taxid": "655186",
        "organism_name": "uncultured Candidatus Thioglobus sp.",
        "infraspecific_name": "",
        "isolate": "",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2009/11/20",
        "asm_name": "ASM20598v2",
        "submitter": "University of British Columbia, Canada",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/205/985/GCA_000205985.2_ASM20598v2",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2009-11-20",
    "dateModified": "2009-11-20",
    "datePublished": "2009-11-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "marine metagenome"
        ],
        "sample_taxid": [
            "408172"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.334 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1173225",
        "Number of Sequences": "92",
        "Longest Sequences (bp)": "64174",
        "N50 (bp)": "19215",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.3",
        "Number of CDSs": "1308",
        "Average Protein Length": "259.6",
        "Coding Ratio (%)": "86.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "31",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Candidatus Thioglobus autotrophicus",
                "strain": "strain=EF1",
                "accession": "GCA_001293165.1",
                "taxid": 1705394,
                "species_taxid": 1705394,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1724,
                "matched_fragments": 131,
                "total_fragments": 344,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_000205985.2",
                "gtdb_species": "s__SUP05 sp000205985",
                "ani": 100.0,
                "matched_fragments": 338,
                "total_fragments": 344,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__SUP05",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.29",
                "min_intra_species_ani": "99.11",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 14,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016845205.1",
                "gtdb_species": "s__UBA2013 sp016845205",
                "ani": 79.9071,
                "matched_fragments": 169,
                "total_fragments": 344,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__UBA2013",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003489145.1",
                "gtdb_species": "s__UBA2013 sp003489145",
                "ani": 79.7805,
                "matched_fragments": 136,
                "total_fragments": 344,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__UBA2013",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.21",
                "min_intra_species_ani": "98.78",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 42,
                "status": "-"
            },
            {
                "accession": "GCA_018648985.1",
                "gtdb_species": "s__UBA2013 sp018648985",
                "ani": 79.7533,
                "matched_fragments": 132,
                "total_fragments": 344,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__UBA2013",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002335045.1",
                "gtdb_species": "s__UBA2013 sp002335045",
                "ani": 79.5466,
                "matched_fragments": 170,
                "total_fragments": 344,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__UBA2013",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "96.96",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003978285.1",
                "gtdb_species": "s__UBA2013 sp003978285",
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                "matched_fragments": 104,
                "total_fragments": 344,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__UBA2013",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001293165.1",
                "gtdb_species": "s__Thioglobus autotrophicus",
                "ani": 79.1724,
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                "total_fragments": 344,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Thioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003978185.1",
                "gtdb_species": "s__UBA2013 sp003978185",
                "ani": 79.123,
                "matched_fragments": 90,
                "total_fragments": 344,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__UBA2013",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012963565.1",
                "gtdb_species": "s__DTVJ01 sp012963565",
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                "matched_fragments": 119,
                "total_fragments": 344,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__DTVJ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001298715.1",
                "gtdb_species": "s__Thiodubiliella sp001298715",
                "ani": 78.0808,
                "matched_fragments": 83,
                "total_fragments": 344,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Thiodubiliella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.96",
                "min_intra_species_ani": "97.97",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 38,
                "status": "-"
            },
            {
                "accession": "GCA_014384345.1",
                "gtdb_species": "s__Thioglobus pontius",
                "ani": 77.8559,
                "matched_fragments": 137,
                "total_fragments": 344,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Thioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.85",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__PS1",
        "f__Thioglobaceae",
        "g__SUP05",
        "s__SUP05 sp000205985"
    ],
    "_genome_taxon": [
        "uncultured",
        "Candidatus",
        "Thioglobus",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__PS1",
        "f__Thioglobaceae",
        "g__SUP05",
        "s__SUP05 sp000205985",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "PS1",
        "Thioglobaceae",
        "SUP05",
        "SUP05",
        "sp000205985"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}