{
    "type": "genome",
    "identifier": "GCA_000230485.1",
    "organism": "uncultured marine crenarchaeote 'Gulf of Maine'",
    "title": "uncultured marine crenarchaeote 'Gulf of Maine'",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Southern California",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_000230485.1",
        "bioproject": "PRJNA72705",
        "biosample": "SAMN02954312",
        "wgs_master": "AGBE00000000.1",
        "refseq_category": "na",
        "taxid": "1089683",
        "species_taxid": "1089683",
        "organism_name": "uncultured marine crenarchaeote 'Gulf of Maine'",
        "infraspecific_name": "",
        "isolate": "",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2011/10/17",
        "asm_name": "ASM23048v1",
        "submitter": "University of Southern California",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/230/485/GCA_000230485.1_ASM23048v1",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2011-10-17",
    "dateModified": "2011-10-17",
    "datePublished": "2011-10-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "marine metagenome"
        ],
        "sample_taxid": [
            "408172"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.494 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 268.39,
        "strain_heterogeneity": 58.13,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "6451204",
        "Number of Sequences": "1584",
        "Longest Sequences (bp)": "166517",
        "N50 (bp)": "11402",
        "Gap Ratio (%)": "18.170438",
        "GCcontent (%)": "31.2",
        "Number of CDSs": "5818",
        "Average Protein Length": "194.6",
        "Coding Ratio (%)": "52.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "138",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Nitrosopumilus oxyclinae",
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                "accession": "GCA_013407165.1",
                "taxid": 1959104,
                "species_taxid": 1959104,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosopumilus cobalaminigenes",
                "strain": "strain=HCA1",
                "accession": "GCA_013407145.1",
                "taxid": 1470066,
                "species_taxid": 1470066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6177,
                "matched_fragments": 412,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosopumilus adriaticus",
                "strain": "strain=NF5",
                "accession": "GCA_000956175.1",
                "taxid": 1580092,
                "species_taxid": 1580092,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7104,
                "matched_fragments": 404,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosopumilus ureiphilus",
                "strain": "strain=PS0",
                "accession": "GCA_013407185.1",
                "taxid": 1470067,
                "species_taxid": 1470067,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3481,
                "matched_fragments": 434,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosopumilus piranensis",
                "strain": "strain=D3C",
                "accession": "GCA_000875775.1",
                "taxid": 1582439,
                "species_taxid": 1582439,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0374,
                "matched_fragments": 401,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 268.39,
            "strain_heterogeneity": 58.13
        },
        "gtdb_result": [
            {
                "accession": "GCA_905612295.1",
                "gtdb_species": "s__Nitrosopumilus sp905612295",
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                "matched_fragments": 262,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001437625.1",
                "gtdb_species": "s__Nitrosopumilus sp001437625",
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                "matched_fragments": 318,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.62",
                "min_intra_species_ani": "95.42",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_014384445.1",
                "gtdb_species": "s__Nitrosopumilus sp014384445",
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                "matched_fragments": 269,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018657375.1",
                "gtdb_species": "s__Nitrosopumilus sp018657375",
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                "matched_fragments": 218,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.40",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_905616385.1",
                "gtdb_species": "s__Nitrosopumilus sp905616385",
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                "matched_fragments": 221,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.32",
                "min_intra_species_ani": "96.75",
                "mean_intra_species_af": "0.55",
                "min_intra_species_af": "0.53",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902514095.1",
                "gtdb_species": "s__Nitrosopumilus sp902514095",
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                "matched_fragments": 254,
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                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002737455.1",
                "gtdb_species": "s__Nitrosopumilus sp002737455",
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                "matched_fragments": 366,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "98.72",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_018674605.1",
                "gtdb_species": "s__Nitrosopumilus sp018674605",
                "ani": 87.5334,
                "matched_fragments": 167,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.83",
                "min_intra_species_ani": "98.50",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 12,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Thermoproteota",
        "c__Nitrososphaeria",
        "o__Nitrososphaerales",
        "f__Nitrosopumilaceae",
        "g__Nitrosopumilus",
        "s__Nitrosopumilus sp937897875"
    ],
    "_genome_taxon": [
        "uncultured",
        "marine",
        "crenarchaeote",
        "'Gulf",
        "of",
        "Maine'",
        "d__Archaea",
        "p__Thermoproteota",
        "c__Nitrososphaeria",
        "o__Nitrososphaerales",
        "f__Nitrosopumilaceae",
        "g__Nitrosopumilus",
        "s__Nitrosopumilus sp937897875",
        "Archaea",
        "Thermoproteota",
        "Nitrososphaeria",
        "Nitrososphaerales",
        "Nitrosopumilaceae",
        "Nitrosopumilus",
        "Nitrosopumilus",
        "sp937897875"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}