{ "type": "genome", "identifier": "GCA_000495615.1", "organism": "Thiohalocapsa sp. PB-PSB1", "title": "Thiohalocapsa sp. PB-PSB1", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "UC Davis", "publication": [ {} ], "properties": { "assembly_accession": "GCA_000495615.1", "bioproject": "PRJNA215075", "biosample": "SAMN17298306", "wgs_master": "AVFR00000000.1", "refseq_category": "na", "taxid": "1385625", "species_taxid": "1385625", "organism_name": "Thiohalocapsa sp. PB-PSB1", "infraspecific_name": "", "isolate": "PB-PSB1-LS01-2010a", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/11/05", "asm_name": "berryPSB1", "submitter": "UC Davis", "gbrs_paired_asm": "GCF_000495615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/495/615/GCA_000495615.1_berryPSB1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-11-05", "dateModified": "2013-11-05", "datePublished": "2013-11-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Thiohalocapsa sp. PB-PSB1" ], "sample_taxid": [ "1385625" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Sippewissett Salt Marsh, Falmouth, MA" ], "sample_host_location_id": [], "data_size": "1.927 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6747581", "Number of Sequences": "1386", "Longest Sequences (bp)": "31326", "N50 (bp)": "7379", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.7", "Number of CDSs": "5002", "Average Protein Length": "291.2", "Coding Ratio (%)": "64.8", "Number of rRNAs": "1", "Number of tRNAs": "48", "Number of CRISPRs": "9" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thiohalocapsa marina", "strain": 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553982, "species_taxid": 553982, "relation_to_type": "type", "validated": true, "ani": 76.5701, "matched_fragments": 95, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdochromatium marinum", "strain": "strain=DSM 5261", "accession": "GCA_016583795.1", "taxid": 48729, "species_taxid": 48729, "relation_to_type": "type", "validated": true, "ani": 76.5329, "matched_fragments": 96, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halochromatium salexigens", "strain": "strain=DSM 4395", "accession": "GCA_016653295.1", "taxid": 49447, "species_taxid": 49447, "relation_to_type": "type", "validated": true, "ani": 76.3867, "matched_fragments": 176, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_004343155.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 76.3288, "matched_fragments": 129, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium bheemlicum", "strain": "strain=DSM 18632", "accession": "GCA_012276755.1", "taxid": 365339, "species_taxid": 365339, "relation_to_type": "type", "validated": true, "ani": 76.1214, "matched_fragments": 113, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocystis violacea", "strain": "strain=DSM 207", "accession": "GCA_016583575.1", "taxid": 13725, "species_taxid": 13725, "relation_to_type": "type", "validated": true, "ani": 75.9963, "matched_fragments": 132, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio paradoxus", "strain": "strain=ARh 1", "accession": "GCA_000227685.3", "taxid": 108010, "species_taxid": 108010, "relation_to_type": "type", "validated": true, "ani": 75.9219, "matched_fragments": 53, 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