{
    "type": "genome",
    "identifier": "GCA_000508545.1",
    "organism": "Streptococcus anginosus DORA_7",
    "title": "Streptococcus anginosus DORA_7",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_000508545.1",
        "bioproject": "PRJNA221494",
        "biosample": "SAMN02316559",
        "wgs_master": "AZMF00000000.1",
        "refseq_category": "na",
        "taxid": "1403946",
        "species_taxid": "1328",
        "organism_name": "Streptococcus anginosus DORA_7",
        "infraspecific_name": "",
        "isolate": "",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/12/16",
        "asm_name": "Str_DORA_7_velvet_1.1",
        "submitter": "University of California, Berkeley",
        "gbrs_paired_asm": "GCF_000508545.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/508/545/GCA_000508545.1_Str_DORA_7_velvet_1.1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-12-16",
    "dateModified": "2013-12-16",
    "datePublished": "2013-12-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "human gut metagenome"
        ],
        "sample_taxid": [
            "408170"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Comer Children's Hospital at the University of Chicago"
        ],
        "sample_host_location_id": [],
        "data_size": "0.599 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2107102",
        "Number of Sequences": "138",
        "Longest Sequences (bp)": "537826",
        "N50 (bp)": "120006",
        "Gap Ratio (%)": "0.064639",
        "GCcontent (%)": "38.7",
        "Number of CDSs": "2099",
        "Average Protein Length": "285.8",
        "Coding Ratio (%)": "85.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Streptococcus anginosus",
                "strain": "strain=NCTC10713",
                "accession": "GCA_900636475.1",
                "taxid": 1328,
                "species_taxid": 1328,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.7008,
                "matched_fragments": 521,
                "total_fragments": 666,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus anginosus subsp. anginosus",
                "strain": "strain=FDAARGOS_1569",
                "accession": "GCA_020735765.1",
                "taxid": 1671923,
                "species_taxid": 1328,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.6536,
                "matched_fragments": 508,
                "total_fragments": 666,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus anginosus",
                "strain": "strain=DSM 20563",
                "accession": "GCA_000373605.1",
                "taxid": 1328,
                "species_taxid": 1328,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.6273,
                "matched_fragments": 521,
                "total_fragments": 666,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus anginosus",
                "strain": "strain=SK52",
                "accession": "GCA_000214555.2",
                "taxid": 1328,
                "species_taxid": 1328,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.617,
                "matched_fragments": 482,
                "total_fragments": 666,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus anginosus",
                "strain": "strain=SK52",
                "accession": "GCA_000474055.1",
                "taxid": 1328,
                "species_taxid": 1328,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.6169,
                "matched_fragments": 516,
                "total_fragments": 666,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus anginosus",
                "strain": "strain=ATCC 33397",
                "accession": "GCA_002088025.1",
                "taxid": 1328,
                "species_taxid": 1328,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.5884,
                "matched_fragments": 527,
                "total_fragments": 666,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus anginosus subsp. whileyi",
                "strain": "strain=CCUG 39159",
                "accession": "GCA_000257765.1",
                "taxid": 1272910,
                "species_taxid": 1328,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.8717,
                "matched_fragments": 521,
                "total_fragments": 666,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus constellatus subsp. pharyngis",
                "strain": "strain=CCUG 46377",
                "accession": "GCA_000474135.1",
                "taxid": 184250,
                "species_taxid": 76860,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2702,
                "matched_fragments": 489,
                "total_fragments": 666,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus constellatus subsp. constellatus",
                "strain": "strain=ATCC 27823",
                "accession": "GCA_008633005.1",
                "taxid": 184246,
                "species_taxid": 76860,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.7219,
                "matched_fragments": 479,
                "total_fragments": 666,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus constellatus subsp. constellatus",
                "strain": "strain=CCUG 24889",
                "accession": "GCA_023167545.1",
                "taxid": 184246,
                "species_taxid": 76860,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.6397,
                "matched_fragments": 494,
                "total_fragments": 666,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus constellatus",
                "strain": "strain=NCTC11325",
                "accession": "GCA_900459125.1",
                "taxid": 76860,
                "species_taxid": 76860,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.6148,
                "matched_fragments": 490,
                "total_fragments": 666,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus constellatus",
                "strain": "strain=FDAARGOS_1156",
                "accession": "GCA_016725005.1",
                "taxid": 76860,
                "species_taxid": 76860,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.5812,
                "matched_fragments": 496,
                "total_fragments": 666,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus downii",
                "strain": "strain=CECT 9732",
                "accession": "GCA_004353325.1",
                "taxid": 1968889,
                "species_taxid": 1968889,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5324,
                "matched_fragments": 150,
                "total_fragments": 666,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus toyakuensis",
                "strain": "strain=TP1632",
                "accession": "GCA_024346585.1",
                "taxid": 2819619,
                "species_taxid": 2819619,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4345,
                "matched_fragments": 145,
                "total_fragments": 666,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus parasuis",
                "strain": "strain=SUT-286",
                "accession": "GCA_021654455.1",
                "taxid": 1501662,
                "species_taxid": 1501662,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.1646,
                "matched_fragments": 96,
                "total_fragments": 666,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900636475.1",
                "gtdb_species": "s__Streptococcus anginosus",
                "ani": 95.7008,
                "matched_fragments": 521,
                "total_fragments": 666,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.16",
                "min_intra_species_ani": "95.41",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 79,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001697145.1",
                "gtdb_species": "s__Streptococcus anginosus_C",
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                "matched_fragments": 515,
                "total_fragments": 666,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
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                "mean_intra_species_ani": "97.71",
                "min_intra_species_ani": "95.87",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 41,
                "status": "-"
            },
            {
                "accession": "GCF_902167705.1",
                "gtdb_species": "s__Streptococcus constellatus_A",
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                "total_fragments": 666,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900459125.1",
                "gtdb_species": "s__Streptococcus constellatus",
                "ani": 89.6407,
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                "total_fragments": 666,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.83",
                "min_intra_species_ani": "96.57",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 32,
                "status": "-"
            },
            {
                "accession": "GCF_000413475.1",
                "gtdb_species": "s__Streptococcus intermedius",
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                "matched_fragments": 467,
                "total_fragments": 666,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.44",
                "min_intra_species_ani": "98.07",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 45,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.235,
        "cell_length": -0.235,
        "doubling_h": -0.216,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.89,
        "genome_size": 1997697.129,
        "gc_content": 38.7,
        "coding_genes": 1880.5,
        "rRNA16S_genes": 4.2,
        "tRNA_genes": 59.857,
        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "range_salinity": 0.285,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Streptococcaceae",
        "g__Streptococcus",
        "s__Streptococcus vaginalis"
    ],
    "_genome_taxon": [
        "Streptococcus",
        "anginosus",
        "DORA_7",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Streptococcaceae",
        "g__Streptococcus",
        "s__Streptococcus vaginalis",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Streptococcaceae",
        "Streptococcus",
        "Streptococcus",
        "vaginalis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}