{ "type": "genome", "identifier": "GCA_000708525.1", "organism": "Cyanobium sp. CACIAM 14", "title": "Cyanobium sp. CACIAM 14", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Universidade Federal do Para", "publication": [ {} ], "properties": { "assembly_accession": "GCA_000708525.1", "bioproject": "PRJNA246088", "biosample": "SAMN02767986", "wgs_master": "JMRP00000000.1", "refseq_category": "na", "taxid": "1496688", "species_taxid": "1496688", "organism_name": "Cyanobium sp. CACIAM 14", "infraspecific_name": "", "isolate": "", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/06/16", "asm_name": "ASM70852v1", "submitter": "Universidade Federal do Para", "gbrs_paired_asm": "GCF_000708525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/708/525/GCA_000708525.1_ASM70852v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-06-16", "dateModified": "2014-06-16", "datePublished": "2014-06-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Cyanobium sp. CACIAM 14" ], "sample_taxid": [ "1496688" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil" ], "sample_host_location_id": [], "data_size": "0.879 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3212489", "Number of Sequences": "71", "Longest Sequences (bp)": "403256", "N50 (bp)": "61937", "Gap Ratio (%)": "0.000031", "GCcontent (%)": "68.6", "Number of CDSs": "3203", "Average Protein Length": "293.9", "Coding Ratio (%)": "87.9", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Parasynechococcus marenigrum", "strain": "strain=WH 8102", 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75.1845, "matched_fragments": 86, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnochorda pilosa", "strain": "strain=HC45", "accession": "GCA_001544015.1", "taxid": 1555112, "species_taxid": 1555112, "relation_to_type": "type", "validated": true, "ani": 75.0486, "matched_fragments": 58, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalospira halophila", "strain": "strain=HL 3", "accession": "GCA_900112605.1", "taxid": 381300, "species_taxid": 381300, "relation_to_type": "type", "validated": true, "ani": 75.0448, "matched_fragments": 62, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium massiliense", "strain": "strain=mt5", "accession": "GCA_900184245.1", "taxid": 1755098, "species_taxid": 1755098, "relation_to_type": "type", "validated": true, "ani": 75.0182, "matched_fragments": 59, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terrae", "strain": "strain=17Sr1-28", "accession": "GCA_003173755.1", "taxid": 2202827, "species_taxid": 2202827, "relation_to_type": "type", "validated": true, "ani": 74.9775, "matched_fragments": 103, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 74.9651, "matched_fragments": 69, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter alkalitolerans", "strain": "strain=KACC 19305", "accession": "GCA_016722765.1", "taxid": 2039631, "species_taxid": 2039631, "relation_to_type": "type", "validated": true, "ani": 74.932, "matched_fragments": 84, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" 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