{
    "type": "genome",
    "identifier": "GCA_000980655.1",
    "organism": "Rhodospirillum sp. UNK.MGS-17",
    "title": "Rhodospirillum sp. UNK.MGS-17",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "The Mayo Clinic",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_000980655.1",
        "bioproject": "PRJNA277012",
        "biosample": "SAMN03456684",
        "wgs_master": "LBCH00000000.1",
        "refseq_category": "na",
        "taxid": "1638782",
        "species_taxid": "1638782",
        "organism_name": "Rhodospirillum sp. UNK.MGS-17",
        "infraspecific_name": "",
        "isolate": "UNK.MGS-17",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/04/24",
        "asm_name": "ASM98065v1",
        "submitter": "The Mayo Clinic",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/980/655/GCA_000980655.1_ASM98065v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-04-24",
    "dateModified": "2015-04-24",
    "datePublished": "2015-04-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodospirillum sp. UNK.MGS-17"
        ],
        "sample_taxid": [
            "1638782"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.527 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1883603",
        "Number of Sequences": "35",
        "Longest Sequences (bp)": "942138",
        "N50 (bp)": "942138",
        "Gap Ratio (%)": "0.640103",
        "GCcontent (%)": "46.6",
        "Number of CDSs": "1838",
        "Average Protein Length": "297.7",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "6",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_001917125.1",
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                "ani": 98.85,
                "matched_fragments": 526,
                "total_fragments": 617,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__Scatocola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.98",
                "min_intra_species_ani": "98.59",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 10,
                "status": "conclusive"
            },
            {
                "accession": "GCA_910577205.1",
                "gtdb_species": "s__Scatocola sp910577205",
                "ani": 80.0287,
                "matched_fragments": 348,
                "total_fragments": 617,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__Scatocola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000436375.1",
                "gtdb_species": "s__Scatacola_A faecigallinarum",
                "ani": 78.6762,
                "matched_fragments": 213,
                "total_fragments": 617,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__Scatacola_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.40",
                "min_intra_species_ani": "96.59",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_001917175.1",
                "gtdb_species": "s__51-20 sp001917175",
                "ani": 78.2625,
                "matched_fragments": 121,
                "total_fragments": 617,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__51-20",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "98.90",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900538765.1",
                "gtdb_species": "s__HGM16780 sp900538765",
                "ani": 78.2116,
                "matched_fragments": 159,
                "total_fragments": 617,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__HGM16780",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.94",
                "min_intra_species_ani": "98.77",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_910585375.1",
                "gtdb_species": "s__MGBC133411 sp910585375",
                "ani": 78.1962,
                "matched_fragments": 140,
                "total_fragments": 617,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__MGBC133411",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017935485.1",
                "gtdb_species": "s__MGBC133411 sp017935485",
                "ani": 78.1493,
                "matched_fragments": 147,
                "total_fragments": 617,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__MGBC133411",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.32",
                "min_intra_species_ani": "98.32",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900551585.1",
                "gtdb_species": "s__CAJLXD01 sp900551585",
                "ani": 77.975,
                "matched_fragments": 125,
                "total_fragments": 617,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__CAJLXD01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017626035.1",
                "gtdb_species": "s__JAGAJR01 sp017626035",
                "ani": 77.9243,
                "matched_fragments": 149,
                "total_fragments": 617,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__JAGAJR01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018362935.1",
                "gtdb_species": "s__CAZU01 sp018362935",
                "ani": 77.7722,
                "matched_fragments": 148,
                "total_fragments": 617,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__CAZU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900762585.1",
                "gtdb_species": "s__HGM16780 sp900762585",
                "ani": 77.7718,
                "matched_fragments": 141,
                "total_fragments": 617,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__HGM16780",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000432275.1",
                "gtdb_species": "s__CAZU01 sp000432275",
                "ani": 77.4871,
                "matched_fragments": 141,
                "total_fragments": 617,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__CAZU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.76",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.088,
        "cell_length": 0.661,
        "doubling_h": 0.579,
        "growth_tmp": 30.833,
        "optimum_tmp": 34.25,
        "optimum_ph": null,
        "genome_size": 4370976.45,
        "gc_content": 67.237,
        "coding_genes": 3856.375,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 53.5,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 1.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__RF32",
        "f__CAG-239",
        "g__Scatocola",
        "s__Scatocola faecipullorum"
    ],
    "_genome_taxon": [
        "Rhodospirillum",
        "sp.",
        "UNK.MGS-17",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__RF32",
        "f__CAG-239",
        "g__Scatocola",
        "s__Scatocola faecipullorum",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "RF32",
        "CAG-239",
        "Scatocola",
        "Scatocola",
        "faecipullorum"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}