{ "type": "genome", "identifier": "GCA_001314705.1", "organism": "Rhodobacteraceae bacterium HLUCCO07", "title": "Rhodobacteraceae bacterium HLUCCO07", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Pacific Northwest National Laboratroy", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001314705.1", "bioproject": "PRJNA283228", "biosample": "SAMN03785505", "wgs_master": "LJSU00000000.1", "refseq_category": "na", "taxid": "1666914", "species_taxid": "1666914", "organism_name": "Rhodobacteraceae bacterium HLUCCO07", "infraspecific_name": "", "isolate": "HLUCCO07", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/14", "asm_name": "ASM131470v1", "submitter": "Pacific Northwest National Laboratroy", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/314/705/GCA_001314705.1_ASM131470v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-14", "dateModified": "2015-10-14", "datePublished": "2015-10-14", "_annotation": { "sample_count": 0, "sample_organism": [], "sample_taxid": [], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.952 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3426878", "Number of Sequences": "35", "Longest Sequences (bp)": "354034", "N50 (bp)": "195241", "Gap Ratio (%)": "0.001342", "GCcontent (%)": "63.8", "Number of CDSs": "3309", "Average Protein Length": "311.0", "Coding Ratio (%)": "90.1", "Number of rRNAs": "1", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseovarius nitratireducens", "strain": "strain=TFZ", "accession": "GCA_002925845.1", "taxid": 2044597, "species_taxid": 2044597, "relation_to_type": "type", "validated": true, "ani": 78.9517, "matched_fragments": 434, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius halotolerans", "strain": "strain=CECT 8110", "accession": "GCA_900172255.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 78.8678, "matched_fragments": 446, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius halotolerans", "strain": "strain=DSM 29507", "accession": "GCA_003634925.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 78.8396, "matched_fragments": 459, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutimaribacter saemankumensis", "strain": "strain=DSM 28010", "accession": "GCA_900100005.1", "taxid": 490829, "species_taxid": 490829, "relation_to_type": "type", "validated": true, "ani": 78.7287, "matched_fragments": 484, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=CGMCC 1.13219", "accession": "GCA_014640375.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 78.662, "matched_fragments": 481, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=DSM 29340", "accession": "GCA_900109035.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 78.6316, "matched_fragments": 494, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_008728195.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 78.5775, "matched_fragments": 477, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 78.5605, "matched_fragments": 473, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_900112725.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 78.5414, "matched_fragments": 472, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=B108", "accession": "GCA_001441635.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 78.5356, "matched_fragments": 471, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius faecimaris", "strain": "strain=MME-070", "accession": "GCA_009762325.1", "taxid": 2494550, "species_taxid": 2494550, "relation_to_type": "type", "validated": true, "ani": 78.3733, "matched_fragments": 402, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 78.2785, "matched_fragments": 391, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax lentus", "strain": "strain=DSM 29430", "accession": "GCA_900156805.1", "taxid": 633194, "species_taxid": 633194, "relation_to_type": "type", "validated": true, "ani": 78.2564, "matched_fragments": 409, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria pomeroyi", "strain": "strain=DSS-3", "accession": "GCA_000011965.2", "taxid": 89184, "species_taxid": 89184, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2162, "matched_fragments": 485, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum strictum", "strain": "strain=DSM 11289", "accession": "GCA_009649175.1", "taxid": 58314, "species_taxid": 58314, "relation_to_type": "type", "validated": true, "ani": 78.1964, "matched_fragments": 416, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia sediminis", "strain": "strain=SS33", "accession": "GCA_004358695.1", "taxid": 2547833, "species_taxid": 2547833, "relation_to_type": "type", "validated": true, "ani": 78.1806, "matched_fragments": 315, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salibaculum griseiflavum", "strain": "strain=WDS4C29", "accession": "GCA_003129565.1", "taxid": 1914409, "species_taxid": 1914409, "relation_to_type": "type", "validated": true, "ani": 78.1745, "matched_fragments": 355, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marina", "strain": "strain=CGMCC 1.9108", "accession": "GCA_900101475.1", "taxid": 639004, "species_taxid": 639004, "relation_to_type": "type", "validated": true, "ani": 78.1516, "matched_fragments": 452, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria sediminis", "strain": "strain=CAU 1488", "accession": "GCA_005938215.1", "taxid": 2583820, "species_taxid": 2583820, "relation_to_type": "type", "validated": true, "ani": 78.0355, "matched_fragments": 405, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger bermudensis", "strain": "strain=HTCC2601", "accession": "GCA_000153725.1", "taxid": 344736, "species_taxid": 344736, "relation_to_type": "type", "validated": true, "ani": 77.9198, "matched_fragments": 429, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger profundus", "strain": "strain=CGMCC 1.12377", "accession": "GCA_014637265.1", "taxid": 1229727, "species_taxid": 1229727, "relation_to_type": "type", "validated": true, "ani": 77.9123, "matched_fragments": 387, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter indicus", "strain": "strain=P73", "accession": "GCA_900106965.1", "taxid": 1208324, "species_taxid": 1208324, "relation_to_type": "type", "validated": true, "ani": 77.8822, "matched_fragments": 310, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter indicus", "strain": "strain=P73", "accession": "GCA_000819565.1", "taxid": 1208324, "species_taxid": 1208324, "relation_to_type": "type", "validated": true, "ani": 77.878, "matched_fragments": 315, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 77.8358, "matched_fragments": 305, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger thiooxidans", "strain": "strain=DSM 10146", "accession": 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