{ "type": "genome", "identifier": "GCA_001314765.1", "organism": "Erythrobacteraceae bacterium HL-111", "title": "Erythrobacteraceae bacterium HL-111", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Pacific Northwest National Laboratroy", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001314765.1", "bioproject": "PRJNA283228", "biosample": "SAMN03785506", "wgs_master": "LJSW00000000.1", "refseq_category": "na", "taxid": "1666908", "species_taxid": "1666908", "organism_name": "Erythrobacteraceae bacterium HL-111", "infraspecific_name": "", "isolate": "HL-111", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/10/14", "asm_name": "ASM131476v1", "submitter": "Pacific Northwest National Laboratroy", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/314/765/GCA_001314765.1_ASM131476v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-10-14", "dateModified": "2015-10-14", "datePublished": "2015-10-14", "_annotation": { "sample_count": 0, "sample_organism": [], "sample_taxid": [], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.823 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.69, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3036783", "Number of Sequences": "63", "Longest Sequences (bp)": "191276", "N50 (bp)": "81877", "Gap Ratio (%)": "0.002931", "GCcontent (%)": "68.4", "Number of CDSs": "2843", "Average Protein Length": "321.8", "Coding Ratio (%)": "90.4", "Number of rRNAs": "0", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Erythrobacter litoralis", "strain": "strain=DSM 8509", "accession": "GCA_000714795.1", "taxid": 39960, "species_taxid": 39960, "relation_to_type": "type", "validated": true, "ani": 86.2719, "matched_fragments": 794, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter litoralis", "strain": "strain=DSM 8509", "accession": "GCA_001719165.1", "taxid": 39960, "species_taxid": 39960, "relation_to_type": "type", "validated": true, "ani": 86.2165, "matched_fragments": 807, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter colymbi", "strain": "strain=JCM 18338", "accession": "GCA_002155685.1", "taxid": 1161202, "species_taxid": 1161202, "relation_to_type": "type", "validated": true, "ani": 81.3194, "matched_fragments": 646, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter donghaensis", "strain": "strain=DSM 16220", "accession": "GCA_002155425.1", "taxid": 267135, "species_taxid": 267135, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2009, "matched_fragments": 635, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter dokdonensis", "strain": "strain=DSW-74", "accession": "GCA_001677335.1", "taxid": 328225, "species_taxid": 328225, "relation_to_type": "type", "validated": true, "ani": 81.149, "matched_fragments": 610, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter tepidarius", "strain": "strain=DSM 10594", "accession": "GCA_002155695.1", "taxid": 60454, "species_taxid": 60454, "relation_to_type": "type", "validated": true, "ani": 80.6996, "matched_fragments": 630, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter sanguineus", "strain": "strain=JCM 20691", "accession": "GCA_002155655.1", "taxid": 198312, "species_taxid": 198312, "relation_to_type": "type", "validated": true, "ani": 80.4336, "matched_fragments": 610, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter sanguineus", "strain": "strain=DSM 11032", "accession": "GCA_900143235.1", "taxid": 198312, "species_taxid": 198312, "relation_to_type": "type", "validated": true, "ani": 80.4197, "matched_fragments": 611, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania pelagi", "strain": "strain=JCM 17468", "accession": "GCA_009827295.1", "taxid": 994320, "species_taxid": 994320, "relation_to_type": "type", "validated": true, "ani": 79.5294, "matched_fragments": 451, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 79.4627, "matched_fragments": 460, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 79.3567, "matched_fragments": 467, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 79.1868, "matched_fragments": 498, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter rubeus", "strain": "strain=KMU-140", "accession": "GCA_014705715.1", "taxid": 2760803, "species_taxid": 2760803, "relation_to_type": "type", "validated": true, "ani": 78.9603, "matched_fragments": 445, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 78.682, "matched_fragments": 357, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium marinum", "strain": "strain=CGMCC 1.12918", "accession": "GCA_014640055.1", "taxid": 1514948, "species_taxid": 1514948, "relation_to_type": "type", "validated": true, "ani": 78.3758, "matched_fragments": 354, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.69, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_900105095.1", "gtdb_species": "s__Erythrobacter sp900105095", "ani": 99.9922, "matched_fragments": 980, "total_fragments": 981, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_011765465.1", "gtdb_species": "s__Erythrobacter sp011765465", "ani": 87.1237, "matched_fragments": 823, "total_fragments": 981, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001719165.1", "gtdb_species": "s__Erythrobacter litoralis", "ani": 86.2165, "matched_fragments": 807, "total_fragments": 981, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016125555.1", "gtdb_species": "s__Erythrobacter sp016125555", "ani": 82.5431, "matched_fragments": 659, "total_fragments": 981, "gtdb_taxonomy": 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