{
    "type": "genome",
    "identifier": "GCA_001314905.1",
    "organism": "Phormidium sp. OSCR",
    "title": "Phormidium sp. OSCR",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Pacific Northwest National Laboratroy",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_001314905.1",
        "bioproject": "PRJNA283228",
        "biosample": "SAMN03785507",
        "wgs_master": "LJZT00000000.1",
        "refseq_category": "na",
        "taxid": "1666905",
        "species_taxid": "1666905",
        "organism_name": "Phormidium sp. OSCR",
        "infraspecific_name": "",
        "isolate": "OSCR",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/10/14",
        "asm_name": "ASM131490v1",
        "submitter": "Pacific Northwest National Laboratroy",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/314/905/GCA_001314905.1_ASM131490v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-10-14",
    "dateModified": "2015-10-14",
    "datePublished": "2015-10-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Phormidium sp. OSCR"
        ],
        "sample_taxid": [
            "1666905"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.337 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4694862",
        "Number of Sequences": "187",
        "Longest Sequences (bp)": "149954",
        "N50 (bp)": "37650",
        "Gap Ratio (%)": "0.003408",
        "GCcontent (%)": "51.1",
        "Number of CDSs": "3924",
        "Average Protein Length": "334.3",
        "Coding Ratio (%)": "83.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "8"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Baaleninema simplex",
                "strain": "strain=PCC 7105",
                "accession": "GCA_000332355.1",
                "taxid": 2862350,
                "species_taxid": 2862350,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.018,
                "matched_fragments": 266,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oscillatoria acuminata",
                "strain": "strain=PCC 6304",
                "accession": "GCA_000317105.1",
                "taxid": 118323,
                "species_taxid": 118323,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7838,
                "matched_fragments": 119,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prochlorothrix hollandica",
                "strain": "strain=PCC 9006",
                "accession": "GCA_000332315.1",
                "taxid": 1223,
                "species_taxid": 1223,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4423,
                "matched_fragments": 65,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rippkaea orientalis",
                "strain": "strain=PCC 8801",
                "accession": "GCA_000021805.1",
                "taxid": 2546366,
                "species_taxid": 2546366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.41,
                "matched_fragments": 62,
                "total_fragments": 1467,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_001314905.1",
                "gtdb_species": "s__Phormidium_A sp001314905",
                "ani": 100.0,
                "matched_fragments": 1461,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__Phormidium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001637315.1",
                "gtdb_species": "s__Phormidium_A willei_A",
                "ani": 89.7855,
                "matched_fragments": 1101,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__Phormidium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.56",
                "min_intra_species_ani": "95.56",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_004299065.1",
                "gtdb_species": "s__Phormidium_A sp004299065",
                "ani": 89.742,
                "matched_fragments": 1026,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__Phormidium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.50",
                "min_intra_species_ani": "99.50",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_007693465.1",
                "gtdb_species": "s__Phormidium_A sp007693465",
                "ani": 85.8662,
                "matched_fragments": 801,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__Phormidium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009846485.1",
                "gtdb_species": "s__Phormidium_A sp009846485",
                "ani": 84.712,
                "matched_fragments": 1135,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__Phormidium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012911965.1",
                "gtdb_species": "s__Phormidium_A sp007126595",
                "ani": 84.0428,
                "matched_fragments": 959,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Geitlerinemaceae;g__Phormidium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.08",
                "min_intra_species_ani": "98.97",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_014698145.1",
                "gtdb_species": "s__FACHB-1406 sp014698145",
                "ani": 75.8772,
                "matched_fragments": 52,
                "total_fragments": 1467,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Spirulinaceae;g__FACHB-1406",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Geitlerinemaceae",
        "g__Sodalinema",
        "s__Sodalinema sp001314905"
    ],
    "_genome_taxon": [
        "Phormidium",
        "sp.",
        "OSCR",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Geitlerinemaceae",
        "g__Sodalinema",
        "s__Sodalinema sp001314905",
        "Bacteria",
        "Cyanobacteriota",
        "Cyanobacteriia",
        "Cyanobacteriales",
        "Geitlerinemaceae",
        "Sodalinema",
        "Sodalinema",
        "sp001314905"
    ],
    "_meo": [
        {
            "id": "MEO_0000116",
            "label": "biofilm"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}