{ "type": "genome", "identifier": "GCA_001439005.1", "organism": "Acidimicrobium sp. BACL17 MAG-120924-bin0", "title": "Acidimicrobium sp. BACL17 MAG-120924-bin0", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "Kungliga Tekniska Hogskolan", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001439005.1", "bioproject": "PRJNA273799", "biosample": "SAMN03741950", "wgs_master": "LIAP00000000.1", "refseq_category": "na", "taxid": "1655565", "species_taxid": "1655565", "organism_name": "Acidimicrobium sp. BACL17 MAG-120924-bin0", "infraspecific_name": "", "isolate": "BACL17 MAG-120924-bin0", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/11/06", "asm_name": "ASM143900v1", "submitter": "Kungliga Tekniska Hogskolan", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/439/005/GCA_001439005.1_ASM143900v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-11-06", "dateModified": "2015-11-06", "datePublished": "2015-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidimicrobium sp. BACL17 MAG-120924-bin0" ], "sample_taxid": [ "1655565" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Baltic Sea" ], "sample_host_location_id": [], "data_size": "0.443 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 112.0, "max": 112.0 }, "completeness": 90.74, "contamination": 2.08, "strain_heterogeneity": 75.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1543409", "Number of Sequences": "451", "Longest Sequences (bp)": "32222", "N50 (bp)": "4860", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.4", "Number of CDSs": "1237", "Average Protein Length": "276.6", "Coding Ratio (%)": "66.5", "Number of rRNAs": "1", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 90.74, "contamination": 2.08, 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"GCA_903850275.1", "gtdb_species": "s__UBA3006 sp903850275", "ani": 78.2507, "matched_fragments": 55, "total_fragments": 274, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__UBA3006", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.61", "min_intra_species_ani": "96.61", "mean_intra_species_af": "0.70", "min_intra_species_af": "0.70", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_007279905.1", "gtdb_species": "s__UBA3006 sp007279905", "ani": 76.8317, "matched_fragments": 52, "total_fragments": 274, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__UBA3006", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Acidimicrobiia", "o__Acidimicrobiales", "f__Ilumatobacteraceae", "g__UBA3006", "s__UBA3006 sp001438985" ], "_genome_taxon": [ "Acidimicrobium", "sp.", "BACL17", "MAG-120924-bin0", "d__Bacteria", "p__Actinomycetota", "c__Acidimicrobiia", "o__Acidimicrobiales", "f__Ilumatobacteraceae", "g__UBA3006", "s__UBA3006 sp001438985", "Bacteria", "Actinomycetota", "Acidimicrobiia", "Acidimicrobiales", "Ilumatobacteraceae", "UBA3006", "UBA3006", "sp001438985" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }