{
    "type": "genome",
    "identifier": "GCA_001443485.1",
    "organism": "Armatimonadetes bacterium CSP1-3",
    "title": "Armatimonadetes bacterium CSP1-3",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_001443485.1",
        "bioproject": "PRJNA262935",
        "biosample": "SAMN03462097",
        "wgs_master": "LDXQ00000000.1",
        "refseq_category": "na",
        "taxid": "1640515",
        "species_taxid": "1640515",
        "organism_name": "Armatimonadetes bacterium CSP1-3",
        "infraspecific_name": "",
        "isolate": "CSP1-3",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2015/11/13",
        "asm_name": "ASM144348v1",
        "submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/443/485/GCA_001443485.1_ASM144348v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2015-11-13",
    "dateModified": "2015-11-13",
    "datePublished": "2015-11-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Armatimonadetes bacterium CSP1-3"
        ],
        "sample_taxid": [
            "1640515"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Rifle, Colorado"
        ],
        "sample_host_location_id": [],
        "data_size": "0.702 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2535673",
        "Number of Sequences": "154",
        "Longest Sequences (bp)": "108837",
        "N50 (bp)": "28046",
        "Gap Ratio (%)": "0.020586",
        "GCcontent (%)": "68.3",
        "Number of CDSs": "2391",
        "Average Protein Length": "306.4",
        "Coding Ratio (%)": "86.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Thermaerobacter marianensis",
                "strain": "strain=DSM 12885",
                "accession": "GCA_000184705.1",
                "taxid": 73919,
                "species_taxid": 73919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7943,
                "matched_fragments": 54,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas mucosa",
                "strain": "strain=ATCC BAA-692",
                "accession": "GCA_000622225.1",
                "taxid": 207340,
                "species_taxid": 207340,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1522,
                "matched_fragments": 52,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinospica durhamensis",
                "strain": "strain=CSCA 57",
                "accession": "GCA_018139695.1",
                "taxid": 1508375,
                "species_taxid": 1508375,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0333,
                "matched_fragments": 67,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glycomyces artemisiae",
                "strain": "strain=CGMCC 4.7067",
                "accession": "GCA_003002955.1",
                "taxid": 1076443,
                "species_taxid": 1076443,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8912,
                "matched_fragments": 56,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces spiralis",
                "strain": "strain=JCM 3302",
                "accession": "GCA_014654675.1",
                "taxid": 66376,
                "species_taxid": 66376,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8804,
                "matched_fragments": 81,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microtetraspora niveoalba",
                "strain": "strain=NBRC 15239",
                "accession": "GCA_001570405.1",
                "taxid": 46175,
                "species_taxid": 46175,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6778,
                "matched_fragments": 68,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_001443485.1",
                "gtdb_species": "s__CSP1-3 sp001443485",
                "ani": 100.0,
                "matched_fragments": 761,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__CSP1-3;c__CSP1-3;o__CSP1-3;f__CSP1-3;g__CSP1-3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_011047475.1",
                "gtdb_species": "s__CSP1-3 sp011047475",
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                "matched_fragments": 304,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__CSP1-3;c__CSP1-3;o__CSP1-3;f__CSP1-3;g__CSP1-3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011055945.1",
                "gtdb_species": "s__SpSt-190 sp011055945",
                "ani": 78.9106,
                "matched_fragments": 276,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__CSP1-3;c__CSP1-3;o__CSP1-3;f__CSP1-3;g__SpSt-190",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016199305.1",
                "gtdb_species": "s__JACQGZ01 sp016199305",
                "ani": 78.831,
                "matched_fragments": 157,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__CSP1-3;c__CSP1-3;o__CSP1-3;f__CSP1-3;g__JACQGZ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011046845.1",
                "gtdb_species": "s__SpSt-315 sp011046845",
                "ani": 77.3683,
                "matched_fragments": 166,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__CSP1-3;c__CSP1-3;o__CSP1-3;f__13-1-40CM-64-14;g__SpSt-315",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016198805.1",
                "gtdb_species": "s__JACQHU01 sp016198805",
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                "matched_fragments": 63,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__CSP1-3;c__CSP1-3;o__CSP1-3;f__CSP1-3;g__JACQHU01",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016869025.1",
                "gtdb_species": "s__VGFA01 sp016869025",
                "ani": 76.899,
                "matched_fragments": 101,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__CSP1-3;c__CSP1-3;o__CSP1-3;f__CSP1-3;g__VGFA01",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011056185.1",
                "gtdb_species": "s__SpSt-150 sp011056185",
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                "matched_fragments": 53,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__CSP1-3;c__CSP1-3;o__CSP1-3;f__HRBIN32;g__SpSt-150",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
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                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_005882275.1",
                "gtdb_species": "s__NP-7 sp005882275",
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                "matched_fragments": 90,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__CSP1-3;c__CSP1-3;o__CSP1-3;f__NP-7;g__NP-7",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__CSP1-3",
        "c__CSP1-3",
        "o__CSP1-3",
        "f__CSP1-3",
        "g__CSP1-3",
        "s__CSP1-3 sp001443485"
    ],
    "_genome_taxon": [
        "Armatimonadetes",
        "bacterium",
        "CSP1-3",
        "d__Bacteria",
        "p__CSP1-3",
        "c__CSP1-3",
        "o__CSP1-3",
        "f__CSP1-3",
        "g__CSP1-3",
        "s__CSP1-3 sp001443485",
        "Bacteria",
        "CSP1-3",
        "CSP1-3",
        "CSP1-3",
        "CSP1-3",
        "CSP1-3",
        "CSP1-3",
        "sp001443485"
    ],
    "_meo": [
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}