{ "type": "genome", "identifier": "GCA_001462345.1", "organism": "Fibrobacteria bacterium AD312", "title": "Fibrobacteria bacterium AD312", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_001462345.1", "bioproject": "PRJNA293241", "biosample": "SAMN03998888", "wgs_master": "LIUM00000000.1", "refseq_category": "na", "taxid": "1705392", "species_taxid": "1705392", "organism_name": "Fibrobacteria bacterium AD312", "infraspecific_name": "", "isolate": "AD312", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/12/08", "asm_name": "ASM146234v1", "submitter": "The University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/462/345/GCA_001462345.1_ASM146234v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-12-08", "dateModified": "2015-12-08", "datePublished": "2015-12-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Fibrobacteria bacterium AD312" ], "sample_taxid": [ "1705392" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia" ], "sample_host_location_id": [], "data_size": "0.800 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2829483", "Number of Sequences": "50", "Longest Sequences (bp)": "208517", "N50 (bp)": "96172", "Gap Ratio (%)": "0.007280", "GCcontent (%)": "37.4", "Number of CDSs": "2339", "Average Protein Length": "361.7", "Coding Ratio (%)": "89.7", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001462345.1", "gtdb_species": "s__Fibro-01 sp001462345", "ani": 100.0, "matched_fragments": 915, "total_fragments": 919, "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibro-01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_012515825.1", "gtdb_species": "s__Fibro-01 sp012515825", "ani": 87.0514, "matched_fragments": 411, "total_fragments": 919, "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibro-01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012841225.1", "gtdb_species": "s__Fibro-01 sp012841225", "ani": 78.2501, "matched_fragments": 169, "total_fragments": 919, "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibro-01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012523035.1", "gtdb_species": "s__JAAYJH01 sp012523035", "ani": 78.1898, "matched_fragments": 117, "total_fragments": 919, "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__JAAYJH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017631885.1", "gtdb_species": "s__UBA1765 sp017631885", "ani": 76.5048, "matched_fragments": 90, "total_fragments": 919, "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__UBA1765", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.68", "min_intra_species_ani": "97.24", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_017625775.1", "gtdb_species": "s__UBA1765 sp017625775", "ani": 76.3934, "matched_fragments": 63, "total_fragments": 919, "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__UBA1765", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Fibrobacterota", "c__Fibrobacteria", "o__Fibrobacterales", "f__Fibrobacteraceae", "g__Fibro-01", "s__Fibro-01 sp001462345" ], "_genome_taxon": [ "Fibrobacteria", "bacterium", "AD312", "d__Bacteria", "p__Fibrobacterota", "c__Fibrobacteria", "o__Fibrobacterales", "f__Fibrobacteraceae", "g__Fibro-01", "s__Fibro-01 sp001462345", "Bacteria", "Fibrobacterota", "Fibrobacteria", "Fibrobacterales", "Fibrobacteraceae", "Fibro-01", "Fibro-01", "sp001462345" ], "_meo": [ { "id": "MEO_0001192", "label": "anaerobic digester" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }