{
    "type": "genome",
    "identifier": "GCA_001508065.1",
    "organism": "Thermococcus sibiricus",
    "title": "Thermococcus sibiricus",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Lawrence Berkeley National Lab",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_001508065.1",
        "bioproject": "PRJNA278302",
        "biosample": "SAMN03445129",
        "wgs_master": "LGFD00000000.1",
        "refseq_category": "na",
        "taxid": "172049",
        "species_taxid": "172049",
        "organism_name": "Thermococcus sibiricus",
        "infraspecific_name": "",
        "isolate": "41_94_",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/01/08",
        "asm_name": "ASM150806v1",
        "submitter": "Lawrence Berkeley National Lab",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/508/065/GCA_001508065.1_ASM150806v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-01-08",
    "dateModified": "2016-01-08",
    "datePublished": "2016-01-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermococcus sibiricus"
        ],
        "sample_taxid": [
            "172049"
        ],
        "sample_host_organism": [
            "NA"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Alaska, North Slope, Kuparuk formation"
        ],
        "sample_host_location_id": [],
        "data_size": "0.540 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.5,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1890359",
        "Number of Sequences": "107",
        "Longest Sequences (bp)": "79745",
        "N50 (bp)": "37539",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.2",
        "Number of CDSs": "2000",
        "Average Protein Length": "274.1",
        "Coding Ratio (%)": "87.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thermococcus sibiricus",
                "strain": "strain=MM 739",
                "accession": "GCA_000022545.1",
                "taxid": 172049,
                "species_taxid": 172049,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.1673,
                "matched_fragments": 480,
                "total_fragments": 573,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermococcus aggregans",
                "strain": "strain=TY",
                "accession": "GCA_024022995.1",
                "taxid": 110163,
                "species_taxid": 110163,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7488,
                "matched_fragments": 263,
                "total_fragments": 573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus alcaliphilus",
                "strain": "strain=AEDII12",
                "accession": "GCA_024054535.1",
                "taxid": 139207,
                "species_taxid": 139207,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1097,
                "matched_fragments": 235,
                "total_fragments": 573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus litoralis",
                "strain": "strain=DSM 5473",
                "accession": "GCA_000246985.3",
                "taxid": 2265,
                "species_taxid": 2265,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9456,
                "matched_fragments": 239,
                "total_fragments": 573,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 87.5,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000022545.1",
                "gtdb_species": "s__Thermococcus_A sibiricus",
                "ani": 98.1673,
                "matched_fragments": 480,
                "total_fragments": 573,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "98.17",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003663535.1",
                "gtdb_species": "s__Thermococcus_A sp003663535",
                "ani": 91.5726,
                "matched_fragments": 273,
                "total_fragments": 573,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003663525.1",
                "gtdb_species": "s__Thermococcus_A sp003663525",
                "ani": 91.3614,
                "matched_fragments": 300,
                "total_fragments": 573,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.62",
                "min_intra_species_ani": "98.62",
                "mean_intra_species_af": "0.75",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001484685.1",
                "gtdb_species": "s__Thermococcus_A sp001484685",
                "ani": 79.0406,
                "matched_fragments": 187,
                "total_fragments": 573,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.39",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000246985.2",
                "gtdb_species": "s__Thermococcus_A litoralis",
                "ani": 78.9456,
                "matched_fragments": 239,
                "total_fragments": 573,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.93",
                "min_intra_species_ani": "96.93",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017656495.1",
                "gtdb_species": "s__Thermococcus_B sp017656495",
                "ani": 77.6994,
                "matched_fragments": 91,
                "total_fragments": 573,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.06,
        "cell_length": 0.06,
        "doubling_h": -0.143,
        "growth_tmp": 79.5,
        "optimum_tmp": 78.0,
        "optimum_ph": 7.3,
        "genome_size": 1845800.0,
        "gc_content": 40.2,
        "coding_genes": 1953.667,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.5,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Methanobacteriota_B",
        "c__Thermococci",
        "o__Thermococcales",
        "f__Thermococcaceae",
        "g__Thermococcus_A",
        "s__Thermococcus_A sibiricus"
    ],
    "_genome_taxon": [
        "Thermococcus",
        "sibiricus",
        "d__Archaea",
        "p__Methanobacteriota_B",
        "c__Thermococci",
        "o__Thermococcales",
        "f__Thermococcaceae",
        "g__Thermococcus_A",
        "s__Thermococcus_A sibiricus",
        "Archaea",
        "Methanobacteriota",
        "B",
        "Thermococci",
        "Thermococcales",
        "Thermococcaceae",
        "Thermococcus",
        "A",
        "Thermococcus",
        "A",
        "sibiricus"
    ],
    "_meo": [
        {
            "id": "MEO_0001474",
            "label": "oil associated feature"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}