{
    "type": "genome",
    "identifier": "GCA_001508175.1",
    "organism": "Thermococcus sp. 40_45",
    "title": "Thermococcus sp. 40_45",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Lawrence Berkeley National Lab",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_001508175.1",
        "bioproject": "PRJNA278302",
        "biosample": "SAMN03445136",
        "wgs_master": "LGFJ00000000.1",
        "refseq_category": "na",
        "taxid": "1641381",
        "species_taxid": "1641381",
        "organism_name": "Thermococcus sp. 40_45",
        "infraspecific_name": "",
        "isolate": "40_45",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/01/08",
        "asm_name": "ASM150817v1",
        "submitter": "Lawrence Berkeley National Lab",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/508/175/GCA_001508175.1_ASM150817v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-01-08",
    "dateModified": "2016-01-08",
    "datePublished": "2016-01-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermococcus sp. 40_45"
        ],
        "sample_taxid": [
            "1641381"
        ],
        "sample_host_organism": [
            "NA"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Alaska, North Slope, Kuparuk formation"
        ],
        "sample_host_location_id": [],
        "data_size": "0.423 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 75.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1481501",
        "Number of Sequences": "102",
        "Longest Sequences (bp)": "96942",
        "N50 (bp)": "23584",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.0",
        "Number of CDSs": "1510",
        "Average Protein Length": "278.3",
        "Coding Ratio (%)": "85.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thermococcus sibiricus",
                "strain": "strain=MM 739",
                "accession": "GCA_000022545.1",
                "taxid": 172049,
                "species_taxid": 172049,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.5366,
                "matched_fragments": 413,
                "total_fragments": 439,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermococcus aggregans",
                "strain": "strain=TY",
                "accession": "GCA_024022995.1",
                "taxid": 110163,
                "species_taxid": 110163,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.897,
                "matched_fragments": 225,
                "total_fragments": 439,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus alcaliphilus",
                "strain": "strain=AEDII12",
                "accession": "GCA_024054535.1",
                "taxid": 139207,
                "species_taxid": 139207,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2746,
                "matched_fragments": 187,
                "total_fragments": 439,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus litoralis",
                "strain": "strain=DSM 5473",
                "accession": "GCA_000246985.3",
                "taxid": 2265,
                "species_taxid": 2265,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2732,
                "matched_fragments": 187,
                "total_fragments": 439,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 75.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000022545.1",
                "gtdb_species": "s__Thermococcus_A sibiricus",
                "ani": 98.5366,
                "matched_fragments": 413,
                "total_fragments": 439,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "98.17",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003663535.1",
                "gtdb_species": "s__Thermococcus_A sp003663535",
                "ani": 91.7461,
                "matched_fragments": 231,
                "total_fragments": 439,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003663525.1",
                "gtdb_species": "s__Thermococcus_A sp003663525",
                "ani": 91.7379,
                "matched_fragments": 263,
                "total_fragments": 439,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.62",
                "min_intra_species_ani": "98.62",
                "mean_intra_species_af": "0.75",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000246985.2",
                "gtdb_species": "s__Thermococcus_A litoralis",
                "ani": 78.2732,
                "matched_fragments": 187,
                "total_fragments": 439,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.93",
                "min_intra_species_ani": "96.93",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001484685.1",
                "gtdb_species": "s__Thermococcus_A sp001484685",
                "ani": 78.1126,
                "matched_fragments": 167,
                "total_fragments": 439,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.39",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017656495.1",
                "gtdb_species": "s__Thermococcus_B sp017656495",
                "ani": 77.8979,
                "matched_fragments": 77,
                "total_fragments": 439,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.06,
        "cell_length": 0.06,
        "doubling_h": -0.025,
        "growth_tmp": 84.189,
        "optimum_tmp": 83.045,
        "optimum_ph": 7.116,
        "genome_size": 1965459.444,
        "gc_content": 50.932,
        "coding_genes": 2046.309,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 46.015,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.833,
        "range_salinity": 0.5,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Methanobacteriota_B",
        "c__Thermococci",
        "o__Thermococcales",
        "f__Thermococcaceae",
        "g__Thermococcus_A",
        "s__Thermococcus_A sibiricus"
    ],
    "_genome_taxon": [
        "Thermococcus",
        "sp.",
        "40_45",
        "d__Archaea",
        "p__Methanobacteriota_B",
        "c__Thermococci",
        "o__Thermococcales",
        "f__Thermococcaceae",
        "g__Thermococcus_A",
        "s__Thermococcus_A sibiricus",
        "Archaea",
        "Methanobacteriota",
        "B",
        "Thermococci",
        "Thermococcales",
        "Thermococcaceae",
        "Thermococcus",
        "A",
        "Thermococcus",
        "A",
        "sibiricus"
    ],
    "_meo": [
        {
            "id": "MEO_0001474",
            "label": "oil associated feature"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}