{
    "type": "genome",
    "identifier": "GCA_001508375.1",
    "organism": "Desulfotomaculum sp. 46_296",
    "title": "Desulfotomaculum sp. 46_296",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Lawrence Berkeley National Lab",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_001508375.1",
        "bioproject": "PRJNA278302",
        "biosample": "SAMN03445153",
        "wgs_master": "LGFZ00000000.1",
        "refseq_category": "na",
        "taxid": "1635262",
        "species_taxid": "1635262",
        "organism_name": "Desulfotomaculum sp. 46_296",
        "infraspecific_name": "",
        "isolate": "46_296",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/01/08",
        "asm_name": "ASM150837v1",
        "submitter": "Lawrence Berkeley National Lab",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/508/375/GCA_001508375.1_ASM150837v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-01-08",
    "dateModified": "2016-01-08",
    "datePublished": "2016-01-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfotomaculum sp. 46_296"
        ],
        "sample_taxid": [
            "1635262"
        ],
        "sample_host_organism": [
            "NA"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Alaska, North Slope, Schrader Bluff formation"
        ],
        "sample_host_location_id": [],
        "data_size": "0.667 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.62,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2328136",
        "Number of Sequences": "136",
        "Longest Sequences (bp)": "87144",
        "N50 (bp)": "28135",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.8",
        "Number of CDSs": "2231",
        "Average Protein Length": "286.8",
        "Coding Ratio (%)": "82.5",
        "Number of rRNAs": "1",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 99.62,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_003485325.1",
                "gtdb_species": "s__46-80 sp003485325",
                "ani": 99.4431,
                "matched_fragments": 564,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Nap2-2B;g__46-80",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003513005.1",
                "gtdb_species": "s__46-80 sp003513005",
                "ani": 89.1085,
                "matched_fragments": 516,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Nap2-2B;g__46-80",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.40",
                "min_intra_species_ani": "98.81",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002418775.1",
                "gtdb_species": "s__46-80 sp002418775",
                "ani": 87.2732,
                "matched_fragments": 427,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Nap2-2B;g__46-80",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.88",
                "min_intra_species_ani": "99.88",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002382755.1",
                "gtdb_species": "s__46-80 sp002382755",
                "ani": 87.0051,
                "matched_fragments": 385,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfotomaculia;o__Desulfotomaculales;f__Nap2-2B;g__46-80",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.58",
                "min_intra_species_ani": "99.52",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.094,
        "cell_length": 0.48,
        "doubling_h": 0.951,
        "growth_tmp": 47.681,
        "optimum_tmp": 48.966,
        "optimum_ph": 7.359,
        "genome_size": 3500742.194,
        "gc_content": 46.005,
        "coding_genes": 3533.75,
        "rRNA16S_genes": 8.0,
        "tRNA_genes": 61.5,
        "gram_stain": 0.739,
        "sporulation": 1.0,
        "motility": 0.789,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.666,
        "thermophilic_range_tmp": 0.333,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.952,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.047,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_B",
        "c__Desulfotomaculia",
        "o__Desulfotomaculales",
        "f__Nap2-2B",
        "g__46-80",
        "s__46-80 sp003485325"
    ],
    "_genome_taxon": [
        "Desulfotomaculum",
        "sp.",
        "46_296",
        "d__Bacteria",
        "p__Bacillota_B",
        "c__Desulfotomaculia",
        "o__Desulfotomaculales",
        "f__Nap2-2B",
        "g__46-80",
        "s__46-80 sp003485325",
        "Bacteria",
        "Bacillota",
        "B",
        "Desulfotomaculia",
        "Desulfotomaculales",
        "Nap2-2B",
        "46-80",
        "46-80",
        "sp003485325"
    ],
    "_meo": [
        {
            "id": "MEO_0001474",
            "label": "oil associated feature"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}